Mutability Dynamics of an Emergent Single Stranded DNA Virus in a Naïve Host

Multiple-Strain Infections of Borrelia afzelii: A Role for Within-Host Interactions in the Maintenance of Antigenic Diversity?

(2013) Martin Andersson et al.   AMERICAN NATURALIST

Multiple infections and the evolution of virulence

(2013) Samuel Alizon et al.   ECOLOGY LETTERS

Extensive recombination detected among beak and feather disease virus isolates from breeding facilities in Poland

(2013) L. Julian et al.   JOURNAL OF GENERAL VIROLOGY

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular characterisation of beak and feather disease virus (BFDV) in New Zealand and its implications for managing an infectious disease

(2012) Melanie Massaro et al.   ARCHIVES OF VIROLOGY

Tracking Viral Evolution during a Disease Outbreak: the Rapid and Complete Selective Sweep of a Circovirus in the Endangered Echo Parakeet

(2012) S. Kundu et al.   JOURNAL OF VIROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Elimination of False-Positive Polymerase Chain Reaction Results Resulting from Hole Punch Carryover Contamination

(2011) Nicolai Bonne et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Recombination in Eukaryotic Single Stranded DNA Viruses

(2011) Darren P. Martin et al.   Viruses-Basel

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

Global genetic diversity and geographical and host-species distribution of beak and feather disease virus isolates

(2010) A. Varsani et al.   JOURNAL OF GENERAL VIROLOGY

Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old

(2010) V. A. Belyi et al.   JOURNAL OF VIROLOGY

Quasispecies Theory and the Behavior of RNA Viruses

(2010) Adam S. Lauring et al.   PLoS Pathogens

Rapid host adaptation by extensive recombination

(2009) E. van der Walt et al.   JOURNAL OF GENERAL VIROLOGY

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

(2009) S. Duffy et al.   JOURNAL OF GENERAL VIROLOGY

Counteracting Quasispecies Adaptability: Extinction of a Ribavirin-Resistant Virus Mutant by an Alternative Mutagenic Treatment

(2009) Celia Perales et al.   PLoS One

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

(2009) M. Nozawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beak and feather disease virus infection in cockatiels (Nymphicus hollandicus)

(2008) Patrick L. Shearer et al.   AVIAN PATHOLOGY

Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics

(2008) T. F. F. Ng et al.   JOURNAL OF VIROLOGY

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

(2008) P. Lefeuvre et al.   JOURNAL OF VIROLOGY

High Rates of Molecular Evolution in Hantaviruses

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS