Transcriptomic Meta-Analysis of Multiple Sclerosis and Its Experimental Models

Macrophages Produce TGF- -Induced ( -ig-h3) following Ingestion of Apoptotic Cells and Regulate MMP14 Levels and Collagen Turnover in Fibroblasts

(2014) N. Nacu et al.   JOURNAL OF IMMUNOLOGY

Using EAE to better understand principles of immune function and autoimmune pathology

(2013) Manu Rangachari et al.   JOURNAL OF AUTOIMMUNITY

IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1

(2013) Stephen J. Jenkins et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Macrophages in inflammatory multiple sclerosis lesions have an intermediate activation status

(2013) Daphne YS Vogel et al.   Journal of Neuroinflammation

Selective Upregulation of Scavenger Receptors in and Around Demyelinating Areas in Multiple Sclerosis

(2013) Debbie A.E. Hendrickx et al.   JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY

Genomic responses in mouse models poorly mimic human inflammatory diseases

(2013) Junhee Seok et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New tricks from an old dog: Mitochondrial redox signaling in cellular inflammation

(2013) Martin Pelletier et al.   SEMINARS IN IMMUNOLOGY

Pathogenic and regulatory roles for B cells in experimental autoimmune encephalomyelitis

(2012) Monica K. Mann et al.   AUTOIMMUNITY

Astrocytes regulate myelin clearance through recruitment of microglia during cuprizone-induced demyelination

(2012) Thomas Skripuletz et al.   BRAIN

Highly Malignant Behavior of a Murine Oligodendrocyte Precursor Cell Line following Transplantation into the Demyelinated and Nondemyelinated Central Nervous System

(2012) Florian Hansmann et al.   CELL TRANSPLANTATION

In Vitro and In Vivo Models of Multiple Sclerosis

(2012) Baukje J. van der Star et al.   CNS & Neurological Disorders-Drug Targets

Expression of Complement Components and Regulators by Different Subtypes of Bone Marrow-Derived Macrophages

(2012) Chang Luo et al.   INFLAMMATION

Periventricular Demyelination and Axonal Pathology Is Associated with Subependymal Virus Spread in a Murine Model for Multiple Sclerosis

(2012) Maren Kummerfeld et al.   INTERVIROLOGY

LAPTM5 Protein Is a Positive Regulator of Proinflammatory Signaling Pathways in Macrophages

(2012) Wioletta K. Glowacka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Janus-like opposing roles of CD47 in autoimmune brain inflammation in humans and mice

(2012) May H. Han et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Interleukin-10 expression during the acute phase is a putative prerequisite for delayed viral elimination in a murine model for multiple sclerosis

(2012) Vanessa Herder et al.   JOURNAL OF NEUROIMMUNOLOGY

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets

(2011) Daniel Baron et al.   BIOINFORMATICS

The role of CD8+ T cells in a model of multiple sclerosis induced with recombinant myelin oligodendrocyte glycoprotein

(2011) Marija Sajic et al.   Multiple Sclerosis Journal

Lack of cuprizone-induced demyelination in the murine spinal cord despite oligodendroglial alterations substantiates the concept of site-specific susceptibilities of the central nervous system

(2011) V. Herder et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

Experimental in vivo and in vitro models of multiple sclerosis: EAE and beyond

(2011) Markus Kipp et al.   Multiple Sclerosis and Related Disorders

Meta-analysis for pathway enrichment analysis when combining multiple genomic studies

(2010) Kui Shen et al.   BIOINFORMATICS

Comparative gene expression analysis in mouse models for multiple sclerosis, Alzheimer's disease and stroke for identifying commonly regulated and disease-specific gene changes

(2010) Vivian Tseveleki et al.   GENOMICS

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

The cuprizone animal model: new insights into an old story

(2009) Markus Kipp et al.   ACTA NEUROPATHOLOGICA

Cross species analysis of microarray expression data

(2009) Y. Lu et al.   BIOINFORMATICS

Machine learning approach identifies new pathways associated with demyelination in a viral model of multiple sclerosis

(2009) Reiner Ulrich et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Neuropathogenesis of Theiler’s Murine Encephalomyelitis Virus Infection, An Animal Model for Multiple Sclerosis

(2009) Ikuo Tsunoda et al.   Journal of Neuroimmune Pharmacology

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement

(2009) David Moher et al.   PLOS MEDICINE

Multiple Sclerosis: An Immune or Neurodegenerative Disorder?

(2008) Bruce D. Trapp et al.   Annual Review of Neuroscience

Novel role for SLPI in MOG-induced EAE revealed by spinal cord expression analysis

(2008) Andre M Mueller et al.   Journal of Neuroinflammation

Proteomic analysis of active multiple sclerosis lesions reveals therapeutic targets

(2008) May H. Han et al.   NATURE

Limited remyelination in Theiler's murine encephalomyelitis due to insufficient oligodendroglial differentiation of nerve/glial antigen 2 (NG2)-positive putative oligodendroglial progenitor cells

(2008) R. Ulrich et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

(2008) Stephen A. Ramsey et al.   PLoS Computational Biology