- Home
- Publications
- Publication Search
- Publication Details
Title
Mining RNA–Seq Data for Infections and Contaminations
Authors
Keywords
-
Journal
PLoS One
Volume 8, Issue 9, Pages e73071
Publisher
Public Library of Science (PLoS)
Online
2013-09-04
DOI
10.1371/journal.pone.0073071
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- A context-based approach to identify the most likely mapping for RNA-seq experiments
- (2012) Thomas Bonfert et al. BMC BIOINFORMATICS
- Dual RNA-seq of pathogen and host
- (2012) Alexander J. Westermann et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic abundance estimation and diagnostic testing on species level
- (2012) Martin S. Lindner et al. NUCLEIC ACIDS RESEARCH
- Metatranscriptomics and Pyrosequencing Facilitate Discovery of Potential Viral Natural Enemies of the Invasive Caribbean Crazy Ant, Nylanderia pubens
- (2012) Steven M. Valles et al. PLoS One
- Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge
- (2012) Ke Yu et al. PLoS One
- Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing
- (2012) Xuejian Xiong et al. PLoS One
- Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection
- (2012) Lisa Marcinowski et al. PLoS Pathogens
- Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
- (2011) Gregory R. Grant et al. BIOINFORMATICS
- Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
- (2011) Bo Liu et al. BMC GENOMICS
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
- Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
- (2011) M. Castellarin et al. GENOME RESEARCH
- PathSeq: software to identify or discover microbes by deep sequencing of human tissue
- (2011) Aleksandar D Kostic et al. NATURE BIOTECHNOLOGY
- RNASEQR—a streamlined and accurate RNA-seq sequence analysis program
- (2011) Leslie Y. Chen et al. NUCLEIC ACIDS RESEARCH
- The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue
- (2011) Richard A. Moore et al. PLoS One
- Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads
- (2011) Li C. Xia et al. PLoS One
- Primary human cervical carcinoma cells require human papillomavirus E6 and E7 expression for ongoing proliferation
- (2011) Thomas G. Magaldi et al. VIROLOGY
- ClaMS: A Classifier for Metagenomic Sequences
- (2011) Amrita Pati et al. Standards in Genomic Sciences
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
- (2010) Manuel Stark et al. BMC GENOMICS
- Mammalian microRNAs predominantly act to decrease target mRNA levels
- (2010) Huili Guo et al. NATURE
- MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
- (2010) Kai Wang et al. NUCLEIC ACIDS RESEARCH
- Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
- (2010) Jenna L. Morgan et al. PLoS One
- MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences
- (2009) Matthew Horton et al. BIOINFORMATICS
- SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
- (2009) M. Monzoorul Haque et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The NIH Human Microbiome Project
- (2009) et al. GENOME RESEARCH
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
- (2009) Arthur Brady et al. NATURE METHODS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1
- (2008) F. Pfeiffer et al. GENOMICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search