Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA

A Simple Fluorescence Method for pKa Determination in RNA and DNA Reveals Highly Shifted pKa’s

(2013) Jennifer L. Wilcox et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin

(2012) Walter N. Moss et al.   PLoS One

Influenza A Virus Coding Regions Exhibit Host-Specific Global Ordered RNA Structure

(2012) Salvatore F. Priore et al.   PLoS One

Isoenergetic Microarrays To Study the Structure and Interactions of DsrA and OxyS RNAs in Two- and Three-Component Complexes

(2011) Agata Fratczak et al.   BIOCHEMISTRY

Ensemble of Secondary Structures for Encapsidated Satellite Tobacco Mosaic Virus RNA Consistent with Chemical Probing and Crystallography Constraints

(2011) Susan J. Schroeder et al.   BIOPHYSICAL JOURNAL

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

(2011) W. N. Moss et al.   RNA

Structure-Activity Relationships through Sequencing (StARTS) Defines Optimal and Suboptimal RNA Motif Targets for Small Molecules

(2010) Sai Pradeep Velagapudi et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Thermodynamic Characterization of RNA Triloops

(2010) Praneetha Thulasi et al.   BIOCHEMISTRY

Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences

(2010) Zhenjiang Xu et al.   BIOINFORMATICS

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

Binding of Short Oligonucleotides to RNA: Studies of the Binding of Common RNA Structural Motifs to Isoenergetic Microarrays

(2009) Elzbieta Kierzek   BIOCHEMISTRY

Secondary Structures for 5′ Regions of R2 Retrotransposon RNAs Reveal a Novel Conserved Pseudoknot and Regions that Evolve under Different Constraints

(2009) Elzbieta Kierzek et al.   JOURNAL OF MOLECULAR BIOLOGY

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Importance of mRNA Secondary Structural Elements for the Expression of Influenza Virus Genes

(2009) Petr O. Ilyinskii et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function

(2008) Elzbieta Kierzek et al.   NUCLEIC ACIDS RESEARCH

Viral IRES RNA structures and ribosome interactions

(2008) Jeffrey S. Kieft   TRENDS IN BIOCHEMICAL SCIENCES