Measuring gene functional similarity based on group-wise comparison of GO terms

Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty

(2012) Haixuan Yang et al.   BIOINFORMATICS

A sensitive method for computing GO-based functional similarities among genes with ‘shallow annotation’

(2012) Xiujie Chen et al.   GENE

A GRAPH-BASED SEMANTIC SIMILARITY MEASURE FOR THE GENE ONTOLOGY

(2011) MARCO A. ALVAREZ et al.   Journal of Bioinformatics and Computational Biology

Disjunctive shared information between ontology concepts: application to Gene Ontology

(2011) Francisco M Couto et al.   Journal of Biomedical Semantics

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

(2010) Andreas Schlicker et al.   BIOINFORMATICS

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Revealing and avoiding bias in semantic similarity scores for protein pairs

(2010) Jing Wang et al.   BMC BIOINFORMATICS

An ontology-based measure to compute semantic similarity in biomedicine

(2010) Montserrat Batet et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Disease candidate gene identification and prioritization using protein interaction networks

(2009) Jing Chen et al.   BMC BIOINFORMATICS

Semantic similarity based feature extraction from microarray expression data

(2009) Young Rae Cho et al.   International Journal of Data Mining and Bioinformatics

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Gene–disease relationship discovery based on model-driven data integration and database view definition

(2008) S. Yilmaz et al.   BIOINFORMATICS

A relation based measure of semantic similarity for Gene Ontology annotations

(2008) Brendan Sheehan et al.   BMC BIOINFORMATICS

Defining functional distances over Gene Ontology

(2008) Angela del Pozo et al.   BMC BIOINFORMATICS

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources

(2008) Dong Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies

(2008) Csaba Ortutay et al.   NUCLEIC ACIDS RESEARCH