Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline

Challenges of microsatellite development in Lepidoptera: Euphydryas aurinia (Nymphalidae) as a case study

(2014) Melthide SINAMA et al.   EUROPEAN JOURNAL OF ENTOMOLOGY

Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

(2012) Todd A. Castoe et al.   PLoS One

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Successful development of microsatellite markers in a challenging species: the horizontal borer Austroplatypus incompertus (Coleoptera: Curculionidae)

(2011) S. Smith et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development

(2011) MICHAEL G. GARDNER et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries

(2011) THIBAUT MALAUSA et al.   Molecular Ecology Resources

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs

(2010) C E McInerney et al.   HEREDITY

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects

(2009) Emese Meglécz et al.   BIOINFORMATICS

Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data

(2009) Morten E. Allentoft et al.   BIOTECHNIQUES

Development of microsatellite markers from four Hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata

(2009) Gregory T. Concepcion et al.   Conservation Genetics Resources

Isolation and characterization of microsatellite markers for the Crimson Jobfish, Pristipomoides filamentosus (Lutjanidae)

(2009) Michelle R. Gaither et al.   Conservation Genetics Resources

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

Identification of repeat structure in large genomes using repeat probability clouds

(2008) Wanjun Gu et al.   ANALYTICAL BIOCHEMISTRY

Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.)

(2008) I. Fernandez-Silva et al.   THEORETICAL AND APPLIED GENETICS