Metagenomic Profiling of Microbial Composition and Antibiotic Resistance Determinants in Puget Sound

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

(2012) Lisa Zeigler Allen et al.   ISME Journal

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota

(2012) V. Iverson et al.   SCIENCE

Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem

(2011) Seungdae Oh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization and Quantitation of a Novel β-Lactamase Gene Found in a Wastewater Treatment Facility and the Surrounding Coastal Ecosystem

(2011) Miguel I. Uyaguari et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lachnospiraceae and Bacteroidales Alternative Fecal Indicators Reveal Chronic Human Sewage Contamination in an Urban Harbor

(2011) Ryan J. Newton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of novel antibiotic resistance genes identified by functional metagenomics on soil samples

(2011) Gloria Torres-Cortés et al.   ENVIRONMENTAL MICROBIOLOGY

A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

(2011) Mads Albertsen et al.   ISME Journal

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

(2011) Elizabeth A Ottesen et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Structural Variation of Tn10 that Carries tetB Found in Fish Farm Bacteria

(2011) Manabu Furushita et al.   MICROBES AND ENVIRONMENTS

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

(2011) Erik Kristiansson et al.   PLoS One

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

(2011) Tong Zhang et al.   PLoS One

Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance?

(2011) Nick G.H. Taylor et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbial Metagenomics: Beyond the Genome

(2010) Jack A. Gilbert et al.   Annual Review of Marine Science

Metagenomic Analysis of Apple Orchard Soil Reveals Antibiotic Resistance Genes Encoding Predicted Bifunctional Proteins

(2010) J. J. Donato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Identification of Antibiotic-Resistance-Gene Molecular Signatures Suitable as Tracers of Pristine River, Urban, and Agricultural Sources

(2010) H. Storteboom et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators

(2010) Cindy H. Wu et al.   PLoS One

High Frequency of Horizontal Gene Transfer in the Oceans

(2010) L. D. McDaniel et al.   SCIENCE

Release of antibiotic resistant bacteria and genes in the effluent and biosolids of five wastewater utilities in Michigan

(2010) Mariya Munir et al.   WATER RESEARCH

Spatial and temporal changes in the microbial community in an anaerobic swine waste treatment lagoon

(2009) Kimberly L. Cook et al.   ANAEROBE

Understanding and Managing Human Threats to the Coastal Marine Environment

(2009) Caitlin M. Crain et al.   Annals of the New York Academy of Sciences

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent

(2009) S. L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

(2009) Hikaru Suenaga et al.   ISME Journal

Characterization of methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative Staphylococcus spp. isolated from US West Coast public marine beaches

(2009) O. O. Soge et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

The role of natural environments in the evolution of resistance traits in pathogenic bacteria

(2009) J. L. Martinez   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

Wastewater treatment contributes to selective increase of antibiotic resistance among Acinetobacter spp.

(2009) Yongli Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing

(2008) N. Sanapareddy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Antibiotics and antibiotic resistance in water environments

(2008) Fernando Baquero et al.   CURRENT OPINION IN BIOTECHNOLOGY

Centers for Oceans and Human Health: contributions to an emerging discipline

(2008) Edward A Laws et al.   Environmental Health

Linking the oceans to public health: current efforts and future directions

(2008) Hauke L Kite-Powell et al.   Environmental Health

Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces

(2008) C. Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil

(2008) Heather K Allen et al.   ISME Journal

Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology

(2008) Rafael Szczepanowski et al.   JOURNAL OF BIOTECHNOLOGY

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH

The Airborne Metagenome in an Indoor Urban Environment

(2008) Susannah G. Tringe et al.   PLoS One

A Global Map of Human Impact on Marine Ecosystems

(2008) Benjamin S. Halpern et al.   SCIENCE

Phylogenetic analysis of the composition of bacterial communities in human-exploited coastal environments from Mallorca Island (Spain)

(2008) M.M. Aguiló-Ferretjans et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Antimicrobial resistance: its emergence and transmission

(2008) Patrick Boerlin et al.   ANIMAL HEALTH RESEARCH REVIEWS

Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8

(2007) Vera Jencova et al.   RESEARCH IN MICROBIOLOGY