Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

Phylogenetic understanding of clonal populations in an era of whole genome sequencing

(2009) Talima Pearson et al.   INFECTION GENETICS AND EVOLUTION

Phylogeography of Francisella tularensis: Global Expansion of a Highly Fit Clone

(2009) A. J. Vogler et al.   JOURNAL OF BACTERIOLOGY

Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella

(2009) J. T. Foster et al.   JOURNAL OF BACTERIOLOGY

Buruli ulcer: reductive evolution enhances pathogenicity of Mycobacterium ulcerans

(2009) Caroline Demangel et al.   NATURE REVIEWS MICROBIOLOGY

Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis

(2009) Noel H. Smith et al.   NATURE REVIEWS MICROBIOLOGY

Genomic Diversity among Drug Sensitive and Multidrug Resistant Isolates of Mycobacterium tuberculosis with Identical DNA Fingerprints

(2009) Stefan Niemann et al.   PLoS One

The Past and Future of Tuberculosis Research

(2009) Iñaki Comas et al.   PLoS Pathogens

Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens

(2008) Mark Achtman   Annual Review of Microbiology

Relationship between Mycobacterium tuberculosis Genotype and the Clinical Phenotype of Pulmonary and Meningeal Tuberculosis

(2008) G. Thwaites et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evaluation and Strategy for Use of MIRU-VNTRplus, a Multifunctional Database for Online Analysis of Genotyping Data and Phylogenetic Identification of Mycobacterium tuberculosis Complex Isolates

(2008) C. Allix-Beguec et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Progression to Active Tuberculosis, but Not Transmission, Varies byMycobacterium tuberculosisLineage in The Gambia

(2008) Bouke C. de Jong et al.   JOURNAL OF INFECTIOUS DISEASES

Promising loci of variable numbers of tandem repeats for typing Beijing family Mycobacterium tuberculosis

(2008) Y. Murase et al.   JOURNAL OF MEDICAL MICROBIOLOGY

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

Emergence of Extensive Drug Resistance during Treatment for Multidrug-Resistant Tuberculosis

(2008) Helen S. Cox et al.   NEW ENGLAND JOURNAL OF MEDICINE

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats

(2008) I. Grissa et al.   NUCLEIC ACIDS RESEARCH

Insight into Microevolution of Yersinia pestis by Clustered Regularly Interspaced Short Palindromic Repeats

(2008) Yujun Cui et al.   PLoS One

Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities

(2008) A. F. Andersson et al.   SCIENCE

The clinical consequences of strain diversity in Mycobacterium tuberculosis

(2008) Mark P. Nicol et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography

(2008) Ruth Hershberg et al.   PLOS BIOLOGY

The Influence of Host and Bacterial Genotype on the Development of Disseminated Disease with Mycobacterium tuberculosis

(2008) Maxine Caws et al.   PLoS Pathogens

Origin, Spread and Demography of the Mycobacterium tuberculosis Complex

(2008) Thierry Wirth et al.   PLoS Pathogens