Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2

Transfer of Escherichia coli O157:H7 from Soil, Water, and Manure Contaminated with Low Numbers of the Pathogen to Lettuce Plants

(2016) GABRIEL MOOTIAN et al.   JOURNAL OF FOOD PROTECTION

Comparative genomics of Shiga toxin encoding bacteriophages

(2012) Darren L Smith et al.   BMC GENOMICS

A Comparison of Shiga-Toxin 2 Bacteriophage from Classical Enterohemorrhagic Escherichia coli Serotypes and the German E. coli O104:H4 Outbreak Strain

(2012) Chad R. Laing et al.   PLoS One

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

(2011) Wenling E Chang et al.   BMC BIOINFORMATICS

Molecular Mechanisms That Mediate Colonization of Shiga Toxin-Producing Escherichia coli Strains

(2011) Mauricio J. Farfan et al.   INFECTION AND IMMUNITY

Assessment of transduction of Escherichia coli Stx2-encoding phage in dairy process conditions

(2011) Claudia Picozzi et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Bile Salts Induce Resistance to Polymyxin in Enterohemorrhagic Escherichia coliO157:H7

(2011) J. V. Kus et al.   JOURNAL OF BACTERIOLOGY

Complete Sequences of Plasmids from the Hemolytic-Uremic Syndrome-Associated Escherichia coli Strain HUSEC41

(2011) C. Kunne et al.   JOURNAL OF BACTERIOLOGY

Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

(2011) Martina Bielaszewska et al.   LANCET INFECTIOUS DISEASES

Enteropathogenic and enterohaemorrhagic Escherichia coli: even more subversive elements

(2011) Alexander R. C. Wong et al.   MOLECULAR MICROBIOLOGY

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4

(2011) Holger Rohde et al.   NEW ENGLAND JOURNAL OF MEDICINE

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

(2011) Alexander Mellmann et al.   PLoS One

Epidemiological Expansion, Structural Studies, and Clinical Challenges of New β-Lactamases from Gram-Negative Bacteria

(2010) Karen Bush et al.   Annual Review of Microbiology

Identification and Characterization of CTX-M-Producing Shigella Isolates in the United States

(2010) J. P. Folster et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Fresh fruit and vegetables as vehicles for the transmission of human pathogens

(2010) Cedric N. Berger et al.   ENVIRONMENTAL MICROBIOLOGY

Phage-induced lysis enhances biofilm formation in Shewanella oneidensis MR-1

(2010) Julia Gödeke et al.   ISME Journal

Survival of Escherichia coli in the environment: fundamental and public health aspects

(2010) Jan Dirk van Elsas et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Escherichia coli Shiga Toxin Mechanisms of Action in Renal Disease

(2010) Tom G. Obrig   Toxins

Characterization of a New Metallo- -Lactamase Gene, blaNDM-1, and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

(2009) D. Yong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

DIYA: a bacterial annotation pipeline for any genomics lab

(2009) Andrew C. Stewart et al.   BIOINFORMATICS

The Pic Protease of Enteroaggregative Escherichia coli Promotes Intestinal Colonization and Growth in the Presence of Mucin

(2009) S. M. Harrington et al.   INFECTION AND IMMUNITY

The Secret Life of the Anthrax Agent Bacillus anthracis: Bacteriophage-Mediated Ecological Adaptations

(2009) Raymond Schuch et al.   PLoS One

Genome Project Standards in a New Era of Sequencing

(2009) P. S. G. Chain et al.   SCIENCE

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

(2008) Tim Carver et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH