Distribution and Quantification of Antibiotic Resistant Genes and Bacteria across Agricultural and Non-Agricultural Metagenomes

Source Tracking of Escherichia coli O157:H7 and Salmonella Contamination in the Lairage Environment at Commercial U.S. Beef Processing Plants and Identification of an Effective Intervention

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Salmonella Prevalence and Antimicrobial Susceptibility from the National Animal Health Monitoring System Swine 2000 and 2006 Studies

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Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

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Diversity of Multidrug-ResistantSalmonella entericaStrains Associated with Cattle at Harvest in the United States

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Extended-Spectrum Beta-Lactamase Gene Sequences in Gram-Negative Saprophytes on Retail Organic and Nonorganic Spinach

(2011) Eva Raphael et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analysis of Kimchi, a Traditional Korean Fermented Food

(2011) Ji Young Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Community Analysis of Beef Cattle Feedlots Reveals That Pen Surface Is Distinct from Feces

(2011) Lisa M. Durso et al.   Foodborne Pathogens and Disease

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

(2010) Charmaine Ng et al.   ISME Journal

Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice

(2010) Kelly S Swanson et al.   ISME Journal

Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach

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Tracking Acquired Antibiotic Resistance in Commensal Bacteria of Galápagos Land Iguanas: No Man, No Resistance

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World Health Organization Ranking of Antimicrobials According to Their Importance in Human Medicine: A Critical Step for Developing Risk Management Strategies for the Use of Antimicrobials in Food Production Animals

(2009) Peter Collignon et al.   CLINICAL INFECTIOUS DISEASES

Conjugative Transfer of Plasmid-Located Antibiotic Resistance Genes Within the Gastrointestinal Tract of Lesser Mealworm Larvae, Alphitobius diaperinus (Coleoptera: Tenebrionidae)

(2009) Tawni L. Crippen et al.   Foodborne Pathogens and Disease

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat

(2008) Victor Kunin et al.   Molecular Systems Biology

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

(2008) Ani Qu et al.   PLoS One

Bacteria Subsisting on Antibiotics

(2008) G. Dantas et al.   SCIENCE