Exploring Protein Dynamics Space: The Dynasome as the Missing Link between Protein Structure and Function
Published 2012 View Full Article
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Title
Exploring Protein Dynamics Space: The Dynasome as the Missing Link between Protein Structure and Function
Authors
Keywords
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Journal
PLoS One
Volume 7, Issue 5, Pages e33931
Publisher
Public Library of Science (PLoS)
Online
2012-05-12
DOI
10.1371/journal.pone.0033931
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Note: Only part of the references are listed.- Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
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- (2010) Marc W. van der Kamp et al. STRUCTURE
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