L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier
Authors
Keywords
-
Journal
PLoS One
Volume 7, Issue 4, Pages e35666
Publisher
Public Library of Science (PLoS)
Online
2012-04-28
DOI
10.1371/journal.pone.0035666
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Prediction of catalytic residues based on an overlapping amino acid classification
- (2010) Yongchao Dou et al. AMINO ACIDS
- Metric learning for enzyme active-site search
- (2010) Tsuyoshi Kato et al. BIOINFORMATICS
- Prediction of protein–RNA binding sites by a random forest method with combined features
- (2010) Zhi-Ping Liu et al. BIOINFORMATICS
- Active site prediction using evolutionary and structural information
- (2010) Sriram Sankararaman et al. BIOINFORMATICS
- Automatic prediction of catalytic residues by modeling residue structural neighborhood
- (2010) Elisa Cilia et al. BMC BIOINFORMATICS
- Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification
- (2010) Cristina Marino Buslje et al. PLoS Computational Biology
- ResBoost: characterizing and predicting catalytic residues in enzymes
- (2009) Ron Alterovitz et al. BMC BIOINFORMATICS
- Several appropriate background distributions for entropy-based protein sequence conservation measures
- (2009) Yongchao Dou et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of Catalytic Residues Using the Variation of Stereochemical Properties
- (2009) Yongchao Dou et al. PROTEIN JOURNAL
- Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties
- (2009) Wenxu Tong et al. PLoS Computational Biology
- Robustness of the residue conservation score reflecting both frequencies and physicochemistries
- (2008) X.-S. Liu et al. AMINO ACIDS
- High-dimensional generalized linear models and the lasso
- (2008) Sara A. van de Geer ANNALS OF STATISTICS
- INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification
- (2008) Sriram Sankararaman et al. BIOINFORMATICS
- Tracing evolutionary pressure
- (2008) Kai Ye et al. BIOINFORMATICS
- Improving position-specific predictions of protein functional sites using phylogenetic motifs
- (2008) K. C. Dukka Bahadur et al. BIOINFORMATICS
- Accurate sequence-based prediction of catalytic residues
- (2008) Tuo Zhang et al. BIOINFORMATICS
- Prediction of protein functional residues from sequence by probability density estimation
- (2008) J. D. Fischer et al. BIOINFORMATICS
- StAR: a simple tool for the statistical comparison of ROC curves
- (2008) Ismael A Vergara et al. BMC BIOINFORMATICS
- An improved prediction of catalytic residues in enzyme structures
- (2008) Y.-R. Tang et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures
- (2008) Sungsam Gong et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More