Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification

Active site prediction using evolutionary and structural information

(2010) Sriram Sankararaman et al.   BIOINFORMATICS

Automatic prediction of catalytic residues by modeling residue structural neighborhood

(2010) Elisa Cilia et al.   BMC BIOINFORMATICS

Protein interactions and ligand binding: From protein subfamilies to functional specificity

(2010) A. Rausell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information

(2009) C. M. Buslje et al.   BIOINFORMATICS

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates

(2009) R. Matthew Ward et al.   BIOINFORMATICS

ResBoost: characterizing and predicting catalytic residues in enzymes

(2009) Ron Alterovitz et al.   BMC BIOINFORMATICS

Evolutionary Trace Annotation of Protein Function in the Structural Proteome

(2009) Serkan Erdin et al.   JOURNAL OF MOLECULAR BIOLOGY

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Correlated mutation analyses on super-family alignments reveal functionally important residues

(2009) Remko K. P. Kuipers et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties

(2009) Wenxu Tong et al.   PLoS Computational Biology

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

(2008) Sriram Sankararaman et al.   BIOINFORMATICS

Accurate sequence-based prediction of catalytic residues

(2008) Tuo Zhang et al.   BIOINFORMATICS

The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction

(2008) Jonathan R Manning et al.   BMC BIOINFORMATICS

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

(2008) David M Kristensen et al.   BMC BIOINFORMATICS

Structural descriptor database: a new tool for sequence-based functional site prediction

(2008) Juliana S Bernardes et al.   BMC BIOINFORMATICS

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation

(2008) T.-Y. Chien et al.   NUCLEIC ACIDS RESEARCH

An improved prediction of catalytic residues in enzyme structures

(2008) Y.-R. Tang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Analysis of the residue-residue coevolution network and the functionally important residues in proteins

(2008) Byung-Chul Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Coevolution in defining the functional specificity

(2008) Saikat Chakrabarti et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS