Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles

Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis

(2013) Ping Wu et al.   CURRENT OPINION IN PLANT BIOLOGY

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

OsMYB2P-1, an R2R3 MYB Transcription Factor, Is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice

(2012) X. Dai et al.   PLANT PHYSIOLOGY

Developing Rice with High Yield under Phosphorus Deficiency: Pup1 Sequence to Application

(2011) J. H. Chin et al.   PLANT PHYSIOLOGY

Phosphate Utilization Efficiency Correlates with Expression of Low-Affinity Phosphate Transporters and Noncoding RNA, IPS1, in Barley

(2011) C. Y. Huang et al.   PLANT PHYSIOLOGY

The Arabidopsis Purple Acid Phosphatase AtPAP10 Is Predominantly Associated with the Root Surface and Plays an Important Role in Plant Tolerance to Phosphate Limitation

(2011) L. Wang et al.   PLANT PHYSIOLOGY

OsPHF1 Regulates the Plasma Membrane Localization of Low- and High-Affinity Inorganic Phosphate Transporters and Determines Inorganic Phosphate Uptake and Translocation in Rice

(2011) Jieyu Chen et al.   PLANT PHYSIOLOGY

mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress

(2011) Youko Oono et al.   Rice

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

SOMBRERO, BEARSKIN1, and BEARSKIN2 Regulate Root Cap Maturation in Arabidopsis

(2010) T. Bennett et al.   PLANT CELL

A Central Regulatory System Largely Controls Transcriptional Activation and Repression Responses to Phosphate Starvation in Arabidopsis

(2010) Regla Bustos et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells

(2009) Yeon Jae Hur et al.   BIOTECHNOLOGY LETTERS

Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information

(2009) Antonio CA Meireles-Filho et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Regulation of OsSPX1 and OsSPX3 on Expression ofOsSPXdomain Genes and Pi-starvation Signaling in Rice

(2009) Zhiye Wang et al.   Journal of Integrative Plant Biology

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

The WRKY6 Transcription Factor Modulates PHOSPHATE1 Expression in Response to Low Pi Stress in Arabidopsis

(2009) Y.-F. Chen et al.   PLANT CELL

Gene expression profiles in rice roots under low phosphorus stress

(2009) Lihua Li et al.   PLANT MOLECULAR BIOLOGY

Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator

(2009) A. P. Smith et al.   PLANT PHYSIOLOGY

Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

(2009) Juan Pariasca-Tanaka et al.   Rice

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

OsPHR2 Is Involved in Phosphate-Starvation Signaling and Excessive Phosphate Accumulation in Shoots of Plants

(2008) J. Zhou et al.   PLANT PHYSIOLOGY