A complex systems approach to Arabidopsis root stem-cell niche developmental mechanisms: from molecules, to networks, to morphogenesis

Different Auxin Response Machineries Control Distinct Cell Fates in the Early Plant Embryo

(2012) Eike H. Rademacher et al.   DEVELOPMENTAL CELL

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

(2012) Géraldine Brunoud et al.   NATURE

A combinatorial TIR1/AFB–Aux/IAA co-receptor system for differential sensing of auxin

(2012) Luz Irina A Calderón Villalobos et al.   Nature Chemical Biology

SCARECROW Has a SHORT-ROOT-Independent Role in Modulating the Sugar Response1

(2012) H. Cui et al.   PLANT PHYSIOLOGY

Cytokinin signaling as a positional cue for patterning the apical-basal axis of the growing Arabidopsis shoot meristem

(2012) V. S. Chickarmane et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mathematical modeling of gene expression: a guide for the perplexed biologist

(2011) Ahmet Ay et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Auxin, Self-Organisation, and the Colonial Nature of Plants

(2011) Ottoline Leyser   CURRENT BIOLOGY

Brassinosteroids control meristem size by promoting cell cycle progression in Arabidopsis roots

(2011) M.-P. Gonzalez-Garcia et al.   DEVELOPMENT

Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root

(2011) S. Miyashima et al.   DEVELOPMENT

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

(2011) T. Vernoux et al.   Molecular Systems Biology

RopGEF7Regulates PLETHORA-Dependent Maintenance of the Root Stem Cell Niche inArabidopsis

(2011) Min Chen et al.   PLANT CELL

The Basic Helix-Loop-Helix Transcription Factor MYC2 Directly RepressesPLETHORAExpression during Jasmonate-Mediated Modulation of the Root Stem Cell Niche inArabidopsis

(2011) Qian Chen et al.   PLANT CELL

Functional characterization of the CKRC1/TAA1 gene and dissection of hormonal actions in the Arabidopsis root

(2011) Zhao-Yang Zhou et al.   PLANT JOURNAL

A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family

(2011) Eike H. Rademacher et al.   PLANT JOURNAL

Type-A response regulators are required for proper root apical meristem function through post-transcriptional regulation of PIN auxin efflux carriers

(2011) Wenjing Zhang et al.   PLANT JOURNAL

Activity of transcription factor JACKDAW is essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT

(2011) Hiromi Ogasawara et al.   PLANT MOLECULAR BIOLOGY

Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis

(2011) Zhe-Hao Chen et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Direct Target Analysis Reveals a Role for SHORT-ROOT in Root Vascular Patterning through Cytokinin Homeostasis

(2011) H. Cui et al.   PLANT PHYSIOLOGY

Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability

(2011) Kirsten H. ten Tusscher et al.   PLoS Computational Biology

A plausible mechanism for auxin patterning along the developing root

(2010) Victoria V Mironova et al.   BMC Systems Biology

Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche

(2010) Eugenio Azpeitia et al.   BMC Systems Biology

Plant stem cell niches: from signalling to execution

(2010) Robert Sablowski   CURRENT OPINION IN PLANT BIOLOGY

Arabidopsis Regeneration from Multiple Tissues Occurs via a Root Development Pathway

(2010) Kaoru Sugimoto et al.   DEVELOPMENTAL CELL

Control of Arabidopsis apical–basal embryo polarity by antagonistic transcription factors

(2010) Zachery R. Smith et al.   NATURE

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth

(2010) R. Sozzani et al.   NATURE

CLE Peptides can Negatively Regulate Protoxylem Vessel Formation via Cytokinin Signaling

(2010) Yuki Kondo et al.   PLANT AND CELL PHYSIOLOGY

Cytokinin Regulation of Auxin Synthesis inArabidopsisInvolves a Homeostatic Feedback Loop Regulated via Auxin and Cytokinin Signal Transduction

(2010) Brian Jones et al.   PLANT CELL

Arabidopsis Tyrosylprotein Sulfotransferase Acts in the Auxin/PLETHORA Pathway in Regulating Postembryonic Maintenance of the Root Stem Cell Niche

(2010) W. Zhou et al.   PLANT CELL

ABA promotes quiescence of the quiescent centre and suppresses stem cell differentiation in the Arabidopsis primary root meristem

(2010) Hanma Zhang et al.   PLANT JOURNAL

SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis

(2010) M. Lucas et al.   PLANT PHYSIOLOGY

Auxin regulates distal stem cell differentiation in Arabidopsis roots

(2010) Z. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis

(2010) Y. Matsuzaki et al.   SCIENCE

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

A Signaling Module Controlling the Stem Cell Niche in Arabidopsis Root Meristems

(2009) Yvonne Stahl et al.   CURRENT BIOLOGY

Repression of Apical Homeobox Genes Is Required for Embryonic Root Development in Arabidopsis

(2009) Stephen P. Grigg et al.   CURRENT BIOLOGY

Chromatin Remodeling in Stem Cell Maintenance in Arabidopsis thaliana

(2009) Wen-Hui Shen et al.   Molecular Plant

Organ regeneration does not require a functional stem cell niche in plants

(2009) Giovanni Sena et al.   NATURE

An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis

(2009) S. V. Petersson et al.   PLANT CELL

Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root

(2009) Hongchang Cui et al.   PLANT JOURNAL

The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

(2009) Vivien Exner et al.   PLoS One

Cytokinin regulates root meristem activity via modulation of the polar auxin transport

(2009) K. Ruzicka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

(2009) S. P. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex regulation of the TIR1/AFB family of auxin receptors

(2009) G. Parry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin Receptors and Plant Development: A New Signaling Paradigm

(2008) Keithanne Mockaitis et al.   Annual Review of Cell and Developmental Biology

Positive feedback in cellular control systems

(2008) Alexander Y. Mitrophanov et al.   BIOESSAYS

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

(2008) Anna N. Stepanova et al.   CELL

Regulative feedback in pattern formation: towards a general relativistic theory of positional information

(2008) J. Jaeger et al.   DEVELOPMENT

Key Divisions in the Early Arabidopsis Embryo Require POL and PLL1 Phosphatases to Establish the Root Stem Cell Organizer and Vascular Axis

(2008) Sang-Kee Song et al.   DEVELOPMENTAL CELL

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis

(2008) Bruno Müller et al.   NATURE

HD-ZIP III Activity Is Modulated by Competitive Inhibitors via a Feedback Loop in Arabidopsis Shoot Apical Meristem Development

(2008) Y.-S. Kim et al.   PLANT CELL

Hormone interactions at the root apical meristem

(2008) Eva Benková et al.   PLANT MOLECULAR BIOLOGY

A Genetic Framework for the Control of Cell Division and Differentiation in the Root Meristem

(2008) R. D. Ioio et al.   SCIENCE