DNA methylation maintenance consolidates RNA-directed DNA methylation and transcriptional gene silencing over generations inArabidopsis thaliana

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

(2014) Xuehua Zhong et al.   CELL

A Two-Step Process for Epigenetic Inheritance in Arabidopsis

(2014) Todd Blevins et al.   MOLECULAR CELL

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

The Ability to Form Homodimers Is Essential for RDM1 to Function in RNA-Directed DNA Methylation

(2014) Taku Sasaki et al.   PLoS One

Inheritance of Trans Chromosomal Methylation patterns fromArabidopsisF1 hybrids

(2014) Ian K. Greaves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of RNA-directed DNA methylation and heritable transcriptional gene silencing as a tool to engineer novel traits in plants

(2013) Megumi Kasai et al.   Plant Biotechnology

Small RNAs and heritable epigenetic variation in plants

(2013) Donna M. Bond et al.   TRENDS IN CELL BIOLOGY

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

IDN2 has a role downstream of siRNA formation in RNA-directed DNA methylation

(2012) Andreas Finke et al.   Epigenetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis

(2012) F. Pontvianne et al.   GENES & DEVELOPMENT

Genetic analysis of RNA-mediated gene silencing in Arabidopsis thaliana

(2012) Andreas Finke et al.   Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety

Plant memory: a tentative model

(2012) M. Thellier et al.   PLANT BIOLOGY

Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana

(2012) Markus Kuhlmann et al.   PLANT MOLECULAR BIOLOGY

Trans Chromosomal Methylation in Arabidopsis hybrids

(2012) I. K. Greaves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Paramutation of tobacco transgenes by small RNA-mediated transcriptional gene silencing

(2011) Lucie Crhák Khaitová et al.   Epigenetics

Genetic Evidence That DNA Methyltransferase DRM2 Has a Direct Catalytic Role in RNA-Directed DNA Methylation in Arabidopsis thaliana

(2011) U. Naumann et al.   GENETICS

HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis

(2011) X. Liu et al.   PLANT PHYSIOLOGY

Genetic Rearrangements Can Modify Chromatin Features at Epialleles

(2011) Andrea M. Foerster et al.   PLoS Genetics

Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1

(2011) Taiko Kim To et al.   PLoS Genetics

An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation

(2010) Zhihuan Gao et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Heterosis

(2010) J. A. Birchler et al.   PLANT CELL

The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana

(2010) Ian R. Henderson et al.   PLoS Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A novel strategy for obtaining kanamycin resistance in Arabidopsis thaliana by silencing an endogenous gene encoding a putative chloroplast transporter

(2009) Werner Aufsatz et al.   Biotechnology Journal

An Effector of RNA-Directed DNA Methylation in Arabidopsis Is an ARGONAUTE 4- and RNA-Binding Protein

(2009) Xin-Jian He et al.   CELL

Multiple Antibiotic Resistance in Arabidopsis Is Conferred by Mutations in a Chloroplast-Localized Transport Protein

(2009) S. Conte et al.   PLANT PHYSIOLOGY

Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography

(2008) Wilfried Rozhon et al.   ANALYTICAL BIOCHEMISTRY

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation

(2008) Lucia Daxinger et al.   EMBO JOURNAL

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

A structural-maintenance-of-chromosomes hinge domain–containing protein is required for RNA-directed DNA methylation

(2008) Tatsuo Kanno et al.   NATURE GENETICS

Trans-generation inheritance of methylation patterns in a tobacco transgene following a post-transcriptional silencing event

(2008) Jana Lunerová-Bedřichová et al.   PLANT JOURNAL

Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis

(2008) Hye Ryun Woo et al.   PLoS Genetics

Small interfering RNA (siRNA) targeting of endogenous promoters induces DNA methylation, but not necessarily gene silencing, in rice

(2007) Yosuke Okano et al.   PLANT JOURNAL

Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation

(2007) Ute Fischer et al.   PLANT JOURNAL