Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genusSaccharum

Haplotype analysis of sucrose synthase gene family in three Saccharum species

(2013) Jisen Zhang et al.   BMC GENOMICS

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags

(2013) Lingfei Shangguan et al.   PLoS One

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Computational identification and analysis of novel sugarcane microRNAs

(2012) Flávia Thiebaut et al.   BMC GENOMICS

Processing of plant microRNA precursors

(2012) N. G. Bologna et al.   Briefings in Functional Genomics

Comparison of Next-Generation Sequencing Systems

(2012) Lin Liu et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

(2012) Aureliano Bombarely et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant

(2012) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

Advances in plant genome sequencing

(2012) John P. Hamilton et al.   PLANT JOURNAL

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Genetic and epigenetic regulation of stress responses in natural plant populations

(2011) Clícia Grativol et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

(2011) S. Renny-Byfield et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Regulatory Activities of Plant MicroRNAs: A More Dynamic Perspective

(2011) Y. Meng et al.   PLANT PHYSIOLOGY

Sugarcane (Saccharum X officinarum): A Reference Study for the Regulation of Genetically Modified Cultivars in Brazil

(2011) Adriana Cheavegatti-Gianotto et al.   Tropical Plant Biology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes

(2010) Jianping Wang et al.   BMC GENOMICS

Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane

(2010) Almir S Zanca et al.   BMC PLANT BIOLOGY

A new strategy for genome assembly using short sequence reads and reduced representation libraries

(2010) A. L. Young et al.   GENOME RESEARCH

Crop genome sequencing: lessons and rationales

(2010) Catherine Feuillet et al.   TRENDS IN PLANT SCIENCE

The next-generation sequencing technology and application

(2010) Xiaoguang Zhou et al.   Protein & Cell

Sugarcane genes associated with sucrose content

(2009) Flavia S Papini-Terzi et al.   BMC GENOMICS

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Plant genome sequencing: applications for crop improvement

(2009) David Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

Detailed Analysis of a Contiguous 22-Mb Region of the Maize Genome

(2009) Fusheng Wei et al.   PLoS Genetics

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains

(2008) William Nelson et al.   BMC GENOMICS

Sequence assembly

(2008) K. Scheibye-Alsing et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Prospects for increasing starch and sucrose yields for bioethanol production

(2008) Alison M. Smith   PLANT JOURNAL