Modelling metabolic CO2evolution - a fresh perspective on respiration

Metabolic Fluxes in an Illuminated Arabidopsis Rosette

(2013) M. Szecowka et al.   PLANT CELL

Plant genome-scale metabolic reconstruction and modelling

(2012) Cristiana Gomes de Oliveira Dal’Molin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Respiratory carbon fluxes in leaves

(2012) Guillaume Tcherkez et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant respiration and photosynthesis in global-scale models: incorporating acclimation to temperature and CO2

(2012) Nicholas G Smith et al.   GLOBAL CHANGE BIOLOGY

Fluxes in central carbohydrate metabolism of source leaves in a fructan-storing C3 grass: rapid turnover and futile cycling of sucrose in continuous light under contrasted nitrogen nutrition status

(2012) Fernando A. Lattanzi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Insights into metabolic efficiency from flux analysis

(2012) Xuewen Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Kinetic modelling of plant metabolic pathways

(2012) Johann M. Rohwer   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies

(2012) J. O'Grady et al.   JOURNAL OF EXPERIMENTAL BOTANY

Frontiers in metabolic reconstruction and modeling of plant genomes

(2012) S. M. D. Seaver et al.   JOURNAL OF EXPERIMENTAL BOTANY

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

(2012) J. Nogales et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth and respiration re-visited: maintenance respiration defined – it is an emergent property of, not a separate process within, the system – and why the respiration : photosynthesis ratio is conservative

(2011) John H. M. Thornley   ANNALS OF BOTANY

Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: lessons from an Arabidopsis cell culture and other systems

(2011) N. J. Kruger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

(2011) Jamey D. Young et al.   METABOLIC ENGINEERING

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism

(2011) R. L. Chang et al.   Molecular Systems Biology

Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to 13C metabolic flux analysis

(2011) Jordan Hay et al.   PLANT JOURNAL

Ascorbate and Glutathione: The Heart of the Redox Hub

(2011) C. H. Foyer et al.   PLANT PHYSIOLOGY

Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism

(2011) Rajib Saha et al.   PLoS One

Flux-Balance Modeling of Plant Metabolism

(2011) Lee J. Sweetlove et al.   Frontiers in Plant Science

Quantitative analysis of photosynthetic carbon metabolism in protoplasts and intact leaves of barley. Determination of carbon fluxes and pool sizes of metabolites in different cellular compartments

(2010) Olav Keerberg et al.   BIOSYSTEMS

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

(2010) Arnau Montagud et al.   BMC Systems Biology

Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis

(2010) Ana Paula Alonso et al.   METABOLIC ENGINEERING

Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering

(2010) Ana P. Alonso et al.   METABOLIC ENGINEERING

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

(2010) Xuewen Chen et al.   METABOLIC ENGINEERING

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Plant respiration in a changing world

(2010) Owen Atkin et al.   NEW PHYTOLOGIST

An analytical model of non-photorespiratory CO2 release in the light and dark in leaves of C3 species based on stoichiometric flux balance

(2010) THOMAS N. BUCKLEY et al.   PLANT CELL AND ENVIRONMENT

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

C4GEM, a Genome-Scale Metabolic Model to Study C4 Plant Metabolism

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions

(2010) Thomas C.R. Williams et al.   PLANT PHYSIOLOGY

13C-Tracer and Gas Chromatography-Mass Spectrometry Analyses Reveal Metabolic Flux Distribution in the Oleaginous Microalga Chlorella protothecoides

(2010) W. Xiong et al.   PLANT PHYSIOLOGY

Simulating Plant Metabolic Pathways with Enzyme-Kinetic Models

(2010) K. Schallau et al.   PLANT PHYSIOLOGY

The Carbon Dioxide Exchange

(2010) P. B. Reich   SCIENCE

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Metabolic turnover analysis by a combination of in vivo13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves

(2009) Tomohisa Hasunuma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

(2009) Maria Piques et al.   Molecular Systems Biology

Analysis of Metabolic Flux Phenotypes for Two Arabidopsis Mutants with Severe Impairment in Seed Storage Lipid Synthesis

(2009) J. Lonien et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

(2009) M. G. Poolman et al.   PLANT PHYSIOLOGY

In Folio Respiratory Fluxomics Revealed by 13C Isotopic Labeling and H/D Isotope Effects Highlight the Noncyclic Nature of the Tricarboxylic Acid "Cycle" in Illuminated Leaves

(2009) G. Tcherkez et al.   PLANT PHYSIOLOGY

Scaling of respiration to nitrogen in leaves, stems and roots of higher land plants

(2008) Peter B. Reich et al.   ECOLOGY LETTERS

Evaluation of the terrestrial carbon cycle, future plant geography and climate-carbon cycle feedbacks using five Dynamic Global Vegetation Models (DGVMs)

(2008) S. SITCH et al.   GLOBAL CHANGE BIOLOGY

On the metabolic origin of the carbon isotope composition of CO2 evolved from darkened light-acclimated leaves in Ricinus communis

(2008) Arthur Gessler et al.   NEW PHYTOLOGIST

Metabolic origin of the δ13 C of respired CO2 in roots of Phaseolus vulgaris

(2008) Camille Bathellier et al.   NEW PHYTOLOGIST

Stable carbon isotopes reveal dynamics of respiratory metabolism

(2008) Margaret M. Barbour et al.   NEW PHYTOLOGIST

Pronounced differences in diurnal variation of carbon isotope composition of leaf respired CO2 among functional groups

(2008) Pierrick Priault et al.   NEW PHYTOLOGIST

Validation of the design of feeding experiments involving [14C]substrates used to monitor metabolic flux in higher plants

(2008) Peter W. Harrison et al.   PHYTOCHEMISTRY

Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons

(2008) VIDYA V. IYER et al.   PLANT CELL AND ENVIRONMENT

The role of light in soybean seed filling metabolism

(2008) Doug K. Allen et al.   PLANT JOURNAL