Evaluating multiplexed next-generation sequencing as a method in palynology for mixed pollen samples

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of plant community composition and flowering phenology on honeybee foraging in Mediterranean sylvo-pastoral systems

(2013) Simonetta Bagella et al.   APPLIED VEGETATION SCIENCE

Territorial biodiversity and consequences on physico-chemical characteristics of pollen collected by honey bee colonies

(2012) Jean-François Odoux et al.   APIDOLOGIE

Pollen diversity collected by honey bees in the vicinity of Vaccinium spp. crops and its importance for colony development1This article is part of a Special Issue entitled “Pollination biology research in Canada: Perspectives on a mutualism at different scales”.

(2012) Mélissa Girard et al.   Botany

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

(2012) Yemin Lan et al.   PLoS One

Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA

(2012) Jingyuan Song et al.   PLoS One

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

(2011) Mark A. Buchheim et al.   PLoS One

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey

(2010) Ida Bærholm Schnell et al.   Arthropod-Plant Interactions

5.8S motifs for the identification of pseudogenic ITS regions

(2010) Doerte Harpke et al.   Botany

Pollen foraging behaviour of solitary Hawaiian bees revealed through molecular pollen analysis

(2010) ERIN E. WILSON et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species

(2010) Shilin Chen et al.   PLoS One

DNA barcoding will frequently fail in complicated groups: An example in wild potatoes

(2009) David M. Spooner   AMERICAN JOURNAL OF BOTANY

Plant-pollinator networks: adding the pollinator’s perspective

(2009) Jordi Bosch et al.   ECOLOGY LETTERS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies

(2009) CORY S. SHEFFIELD et al.   Molecular Ecology Resources

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The ITS2 Database III—sequences and structures for phylogeny

(2009) Christian Koetschan et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2009) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

A RETROSPECTIVE ANALYSIS OF POLLEN HOST PLANT USE BY STABLE AND DECLINING BUMBLE BEE SPECIES

(2008) David Kleijn et al.   ECOLOGY

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

(2008) Alexander Keller et al.   GENE

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION