AtCAST3.0 Update: A Web-Based Tool for Analysis of Transcriptome Data by Searching Similarities in Gene Expression Profiles
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Title
AtCAST3.0 Update: A Web-Based Tool for Analysis of Transcriptome Data by Searching Similarities in Gene Expression Profiles
Authors
Keywords
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Journal
PLANT AND CELL PHYSIOLOGY
Volume 56, Issue 1, Pages e7-e7
Publisher
Oxford University Press (OUP)
Online
2014-12-11
DOI
10.1093/pcp/pcu174
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Note: Only part of the references are listed.- The Arabidopsis transcription factor bZIP11 activates auxin-mediated transcription by recruiting the histone acetylation machinery
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- (2013) Takeshi Obayashi et al. PLANT AND CELL PHYSIOLOGY
- Layered pattern receptor signaling via ethylene and endogenous elicitor peptides during Arabidopsis immunity to bacterial infection
- (2013) N. Tintor et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Type I Interferon Suppresses Type II Interferon-Triggered Human Anti-Mycobacterial Responses
- (2013) R. M. B. Teles et al. SCIENCE
- A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis
- (2013) Yu Zhang et al. PLoS Genetics
- A role for the root cap in root branching revealed by the non-auxin probe naxillin
- (2012) Bert De Rybel et al. Nature Chemical Biology
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- (2012) Eriko Sasaki et al. PHYTOCHEMISTRY
- Taking the Next Step: Building an Arabidopsis Information Portal
- (2012) PLANT CELL
- Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network inArabidopsis
- (2012) Pablo Leivar et al. PLANT CELL
- Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
- (2011) X. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Rank–rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures
- (2010) Seema B. Plaisier et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets--10 years on
- (2010) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- AtCAST, a Tool for Exploring Gene Expression Similarities among DNA Microarray Experiments Using Networks
- (2010) Eriko Sasaki et al. PLANT AND CELL PHYSIOLOGY
- Auxin Biosynthesis Inhibitors, Identified by a Genomics-Based Approach, Provide Insights into Auxin Biosynthesis
- (2010) Kazuo Soeno et al. PLANT AND CELL PHYSIOLOGY
- Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana
- (2010) C. Delker et al. PLANT CELL
- Auxin Perception--Structural Insights
- (2010) L. I. Calderon-Villalobos et al. Cold Spring Harbor Perspectives in Biology
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Mechanism of Auxin-Regulated Gene Expression in Plants
- (2009) Elisabeth J. Chapman et al. Annual Review of Genetics
- EIN2, the central regulator of ethylene signalling, is localized at the ER membrane where it interacts with the ethylene receptor ETR1
- (2009) Melanie M. A. Bisson et al. BIOCHEMICAL JOURNAL
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Plant hormones are versatile chemical regulators of plant growth
- (2009) Aaron Santner et al. Nature Chemical Biology
- Definition of Early Transcriptional Circuitry Involved in Light-Induced Reversal of PIF-Imposed Repression of Photomorphogenesis in Young Arabidopsis Seedlings
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- (2009) BJ��RN USADEL et al. PLANT CELL AND ENVIRONMENT
- HORMONOMETER: A Tool for Discerning Transcript Signatures of Hormone Action in the Arabidopsis Transcriptome
- (2009) D. Volodarsky et al. PLANT PHYSIOLOGY
- Flg22 regulates the release of an ethylene response factor substrate from MAP kinase 6 in Arabidopsis thaliana via ethylene signaling
- (2009) G. Bethke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants
- (2008) Yi Tao et al. CELL
- A modular approach for integrative analysis of large-scale gene-expression and drug-response data
- (2008) Zoltán Kutalik et al. NATURE BIOTECHNOLOGY
- The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
- (2008) Hideki Goda et al. PLANT JOURNAL
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