MTGD: The Medicago truncatula Genome Database

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)

(2013) Peng Zhou et al.   BMC BIOINFORMATICS

Using GBrowse 2.0 to visualize and share next-generation sequence data

(2013) L. D. Stein   BRIEFINGS IN BIOINFORMATICS

Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturation

(2013) Jerome Verdier et al.   PLANT JOURNAL

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases

(2013) Lacey-Anne Sanderson et al.   Database-The Journal of Biological Databases and Curation

Web Apollo: a web-based genomic annotation editing platform

(2013) Eduardo Lee et al.   GENOME BIOLOGY

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

A Proteogenomic Survey of theMedicago truncatulaGenome

(2012) Jeremy D. Volkening et al.   MOLECULAR & CELLULAR PROTEOMICS

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

(2011) Stephen A. Goff et al.   Frontiers in Plant Science

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula

(2008) Million Tadege et al.   PLANT JOURNAL

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY