Comprehensive genomic profiling in diabetic nephropathy reveals the predominance of proinflammatory pathways

NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets

(2013) Marcus R. Breese et al.   BIOINFORMATICS

Potential roles of microRNAs in regulating long intergenic noncoding RNAs

(2013) Liran Juan et al.   BMC Medical Genomics

COPI transport complexes bind to specific RNAs in neuronal cells

(2012) Adrian G. Todd et al.   HUMAN MOLECULAR GENETICS

TRAF6 Protein Couples Toll-like Receptor 4 Signaling to Src Family Kinase Activation and Opening of Paracellular Pathway in Human Lung Microvascular Endothelia

(2012) Anguo Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transforming growth factor-β activates c-Myc to promote palatal growth

(2012) Xiujuan Zhu et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

The CD40-CD40L system in cardiovascular disease

(2011) Burak Pamukcu et al.   ANNALS OF MEDICINE

Controlling nuclear JAKs and STATs for specific gene activation by IFNγ

(2011) Ezra N. Noon-Song et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

SPARC expression induces cell cycle arrest via STAT3 signaling pathway in medulloblastoma cells

(2011) Chandramu Chetty et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Regulation of embryonic stem cell self-renewal and pluripotency by leukaemia inhibitory factor

(2011) Hiroyuki Hirai et al.   BIOCHEMICAL JOURNAL

TGF-β1 → SMAD/p53/USF2 → PAI-1 transcriptional axis in ureteral obstruction-induced renal fibrosis

(2011) Rohan Samarakoon et al.   CELL AND TISSUE RESEARCH

The NFκB paradox: RelB induces and inhibits gene expression

(2011) Lisa A. Madge et al.   CELL CYCLE

Comparing Next-Generation Sequencing and Microarray Technologies in a Toxicological Study of the Effects of Aristolochic Acid on Rat Kidneys

(2011) Zhenqiang Su et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Transcriptome Analysis of Human Diabetic Kidney Disease

(2011) K. I. Woroniecka et al.   DIABETES

8-Oxoguanine-DNA glycosylase 1 deficiency modifies allergic airway inflammation by regulating STAT6 and IL-4 in cells and in mice

(2011) Guoping Li et al.   FREE RADICAL BIOLOGY AND MEDICINE

A whole-genome analysis of premature termination codons

(2011) Elizabeth T. Cirulli et al.   GENOMICS

The Transcription Factor STAT3 Is Required for T Helper 2 Cell Development

(2011) Gretta L. Stritesky et al.   IMMUNITY

Endotoxin Tolerance Impairs IL-1 Receptor-Associated Kinase (IRAK) 4 and TGF-β-activated Kinase 1 Activation, K63-linked Polyubiquitination and Assembly of IRAK1, TNF Receptor-associated Factor 6, and IκB Kinase γ and Increases A20 Expression

(2011) Yanbao Xiong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IL-17-induced NF-κB Activation via CIKS/Act1

(2011) Søren Ulrik Sønder et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Vascular smooth muscle Jak2 deletion prevents angiotensin II-mediated neointima formation following injury in mice

(2011) Annet Kirabo et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

SDF-1  Induces PDGF-B Expression and the Differentiation of Bone Marrow Cells into Pericytes

(2011) R. Hamdan et al.   MOLECULAR CANCER RESEARCH

Combating oxidative stress in vascular disease: NADPH oxidases as therapeutic targets

(2011) Grant R. Drummond et al.   NATURE REVIEWS DRUG DISCOVERY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Transcriptional Networks in Epithelial-Mesenchymal Transition

(2011) Christo Venkov et al.   PLoS One

Signal transducer and activator of transcription-6 (STAT6) inhibition suppresses renal cyst growth in polycystic kidney disease

(2011) E. E. Olsan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing

(2011) A. E. Ayoub et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Snapshots of Full-Length Jak1, a Transmembrane gp130/IL-6/IL-6Rα Cytokine Receptor Complex, and the Receptor-Jak1 Holocomplex

(2011) Patrick J. Lupardus et al.   STRUCTURE

Rapid Progression of Diabetic Nephropathy Is Linked to Inflammation and Episodes of Acute Renal Failure

(2010) K.J. Kelly et al.   AMERICAN JOURNAL OF NEPHROLOGY

Smad linker region phosphorylation in the regulation of extracellular matrix synthesis

(2010) Micah L. Burch et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

IL-8-induced neutrophil chemotaxis is mediated by Janus kinase 3 (JAK3)

(2010) Karen M. Henkels et al.   FEBS LETTERS

The TAK1–TRAF6 signalling pathway

(2010) Marene Landström   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Regulation of the Apaf-1-caspase-9 apoptosome

(2010) S. B. Bratton et al.   JOURNAL OF CELL SCIENCE

The human SWI/SNF complex associates with RUNX1 to control transcription of hematopoietic target genes

(2010) Rachit Bakshi et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Smad2 Protects against TGF- /Smad3-Mediated Renal Fibrosis

(2010) X. M. Meng et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Multiple roles of the cell cycle inhibitor p21CDKN1A in the DNA damage response

(2010) Ornella Cazzalini et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

Epithelial cell cycle arrest in G2/M mediates kidney fibrosis after injury

(2010) Li Yang et al.   NATURE MEDICINE

Treatment of the post-ischaemic inflammatory syndrome of diabetic nephropathy

(2010) K.J. Kelly et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Neuronal caspase-3 signaling: not only cell death

(2009) M D'Amelio et al.   CELL DEATH AND DIFFERENTIATION

Molecular Mechanisms of IFN-γ to Up-Regulate MHC Class I Antigen Processing and Presentation

(2009) Fang Zhou   INTERNATIONAL REVIEWS OF IMMUNOLOGY

Jab1/CSN5 induces the cytoplasmic localization and degradation of RUNX3

(2009) Jang-Hyun Kim et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Reduced c-myc Expression Levels Limit Follicular Mature B Cell Cycling in Response to TLR Signals

(2009) A. Meyer-Bahlburg et al.   JOURNAL OF IMMUNOLOGY

Death receptor signal transducers: nodes of coordination in immune signaling networks

(2009) Nicholas S Wilson et al.   NATURE IMMUNOLOGY

CD36 ligands promote sterile inflammation through assembly of a Toll-like receptor 4 and 6 heterodimer

(2009) Cameron R Stewart et al.   NATURE IMMUNOLOGY

BFAST: An Alignment Tool for Large Scale Genome Resequencing

(2009) Nils Homer et al.   PLoS One

IFNγ signaling—Does it mean JAK–STAT?

(2008) Daniel J. Gough et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Physical and Functional Interactions between STAT5 and Runx Transcription Factors

(2008) Shinya Ogawa et al.   JOURNAL OF BIOCHEMISTRY

CD44-Epidermal Growth Factor Receptor Interaction Mediates Hyaluronic Acid-promoted Cell Motility by Activating Protein Kinase C Signaling Involving Akt, Rac1, Phox, Reactive Oxygen Species, Focal Adhesion Kinase, and MMP-2

(2008) Youngmi Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Chromatin Immunoprecipitation on Microarray Analysis of Smad2/3 Binding Sites Reveals Roles of ETS1 and TFAP2A in Transforming Growth Factor   Signaling

(2008) D. Koinuma et al.   MOLECULAR AND CELLULAR BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Improved Elucidation of Biological Processes Linked to Diabetic Nephropathy by Single Probe-Based Microarray Data Analysis

(2008) Clemens D. Cohen et al.   PLoS One