Transcriptional data mining ofSalvia miltiorrhizain response to methyl jasmonate to examine the mechanism of bioactive compound biosynthesis and regulation

13C Tracer Reveals Phenolic Acids Biosynthesis in Hairy Root Cultures of Salvia miltiorrhiza

(2013) Peng Di et al.   ACS Chemical Biology

CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts

(2013) J. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional profile of Taxus chinensis cells in response to methyl jasmonate

(2012) Shu-tao Li et al.   BMC GENOMICS

Genome-wide identification and characterization of novel genes involved in terpenoid biosynthesis in Salvia miltiorrhiza

(2012) Yimian Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Hormone Signalling Crosstalk in Plant Growth Regulation

(2011) Stephen Depuydt et al.   CURRENT BIOLOGY

De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients

(2011) Hua Wenping et al.   GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The c4h, tat, hppr and hppd Genes Prompted Engineering of Rosmarinic Acid Biosynthetic Pathway in Salvia miltiorrhiza Hairy Root Cultures

(2011) Ying Xiao et al.   PLoS One

Diversification of P450 Genes During Land Plant Evolution

(2010) Masaharu Mizutani et al.   Annual Review of Plant Biology

Tanshinone biosynthesis in Salvia miltiorrhiza and production in plant tissue cultures

(2010) Jian Wen Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

(2010) Chao Sun et al.   BMC GENOMICS

Cloning and characterization of a novel 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from Salvia miltiorrhiza involved in diterpenoid tanshinone accumulation

(2010) Zhubo Dai et al.   JOURNAL OF PLANT PHYSIOLOGY

Candidate genes involved in tanshinone biosynthesis in hairy roots of Salvia miltiorrhiza revealed by cDNA microarray

(2010) Guanghong Cui et al.   MOLECULAR BIOLOGY REPORTS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Molecular cloning, characterization and expression analysis of a new gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from Salvia miltiorrhiza

(2009) Pan Liao et al.   ACTA PHYSIOLOGIAE PLANTARUM

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

(2009) Diana Bellin et al.   BMC GENOMICS

Chemical Characteristics of Salvia miltiorrhiza (Danshen) Collected from Different Locations in China

(2009) Guo-Xin Zhong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The digital generation

(2009) Nathan Blow   NATURE

Recent advances and emerging trends in plant hormone signalling

(2009) Aaron Santner et al.   NATURE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A Functional Genomics Approach to Tanshinone Biosynthesis Provides Stereochemical Insights

(2009) Wei Gao et al.   ORGANIC LETTERS

Methyl jasmonate dramatically enhances the accumulation of phenolic acids inSalvia miltiorrhizahairy root cultures

(2009) Ying Xiao et al.   PHYSIOLOGIA PLANTARUM

Gibberellin Metabolism and its Regulation

(2008) Shinjiro Yamaguchi   Annual Review of Plant Biology

Cloning and characterization of the 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene for diterpenoid tanshinone biosynthesis in Salvia miltiorrhiza (Chinese sage) hairy roots

(2008) Shu Jing Wu et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Advancement in analysis of Salviae miltiorrhizae Radix et Rhizoma (Danshen)

(2008) Yong-Guo Li et al.   JOURNAL OF CHROMATOGRAPHY A

Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza

(2008) Jie Song et al.   MOLECULAR BIOLOGY REPORTS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells

(2008) L. Pauwels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA