Nonmonotonic Diffusion of Particles Among Larger Attractive Crowding Spheres

Macromolecular Crowding as a Regulator of Gene Transcription

(2014) Hiroaki Matsuda et al.   BIOPHYSICAL JOURNAL

Effect of crowding by Dextrans in enzymatic reactions

(2013) Isabel Pastor et al.   BIOPHYSICAL CHEMISTRY

A method for computing association rate constants of atomistically represented proteins under macromolecular crowding

(2012) Sanbo Qin et al.   PHYSICAL BIOLOGY

Exact mean exit time for surface-mediated diffusion

(2012) J.-F. Rupprecht et al.   PHYSICAL REVIEW E

Theory of nanoparticle diffusion in unentangled and entangled polymer melts

(2011) Umi Yamamoto et al.   JOURNAL OF CHEMICAL PHYSICS

New insights into diffusion in 3D crowded media by Monte Carlo simulations: effect of size, mobility and spatial distribution of obstacles

(2011) Eudald Vilaseca et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Crowding-Induced Structural Alterations of Random-Loop Chromosome Model

(2011) Jun Soo Kim et al.   PHYSICAL REVIEW LETTERS

Macromolecular crowding effects on protein–protein binding affinity and specificity

(2010) Young C. Kim et al.   JOURNAL OF CHEMICAL PHYSICS

Diffusion of α-Chymotrypsin in Solution-Crowded Media. A Fluorescence Recovery after Photobleaching Study

(2010) Isabel Pastor et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

Effect of Macromolecular Crowding on Reaction Rates: A Computational and Theoretical Study

(2009) Jun Soo Kim et al.   BIOPHYSICAL JOURNAL

Effects of macromolecular crowding and DNA looping on gene regulation kinetics

(2009) Gene-Wei Li et al.   Nature Physics

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation