The Microbiome

Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age

(2015) Jennifer C Stearns et al.   ISME Journal

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis

(2015) Susan Yost et al.   Genome Medicine

Characterization of Microbial Dysbiosis and Metabolomic Changes in Dogs with Acute Diarrhea

(2015) Blake C. Guard et al.   PLoS One

The Fecal Microbiome in Cats with Diarrhea

(2015) Jan S. Suchodolski et al.   PLoS One

The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease

(2014)   Cell Host & Microbe

Airway Microbiome Dynamics in Exacerbations of Chronic Obstructive Pulmonary Disease

(2014) Y. J. Huang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut

(2014) Weili Xiong et al.   JOURNAL OF PROTEOME RESEARCH

Bacterial transformation: distribution, shared mechanisms and divergent control

(2014) Calum Johnston et al.   NATURE REVIEWS MICROBIOLOGY

The Skin Microbiome in Healthy and Allergic Dogs

(2014) Aline Rodrigues Hoffmann et al.   PLoS One

Comparison of Microbiological, Histological, and Immunomodulatory Parameters in Response to Treatment with Either Combination Therapy with Prednisone and Metronidazole or Probiotic VSL#3 Strains in Dogs with Idiopathic Inflammatory Bowel Disease

(2014) Giacomo Rossi et al.   PLoS One

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prevalence of Clostridium perfringens , Clostridium perfringens enterotoxin and dysbiosis in fecal samples of dogs with diarrhea

(2014) Yasushi Minamoto et al.   VETERINARY MICROBIOLOGY

Widespread Colonization of the Lung byTropheryma whippleiin HIV Infection

(2013) Catherine Lozupone et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

(2013) Alison Morris et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The altered landscape of the human skin microbiome in patients with primary immunodeficiencies

(2013) J. Oh et al.   GENOME RESEARCH

Mortality in Kittens Is Associated with a Shift in Ileum Mucosa-Associated Enterococci from Enterococcus hirae to Biofilm-Forming Enterococcus faecalis and Adherent Escherichia coli

(2013) Anuradha Ghosh et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Propionibacterium acnes Strain Populations in the Human Skin Microbiome Associated with Acne

(2013) Sorel Fitz-Gibbon et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Fecal Microbiota of Cats with Naturally Occurring Chronic Diarrhea Assessed Using 16S rRNA Gene 454-Pyrosequencing before and after Dietary Treatment

(2013) Z. Ramadan et al.   JOURNAL OF VETERINARY INTERNAL MEDICINE

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Pyrosequencing the Canine Faecal Microbiota: Breadth and Depth of Biodiversity

(2013) Daniel Hand et al.   PLoS One

The microbiome extends to subepidermal compartments of normal skin

(2013) Teruaki Nakatsuji et al.   Nature Communications

The Cystic Fibrosis Airway Microbiome

(2013) S. V. Lynch et al.   Cold Spring Harbor Perspectives in Medicine

Cohabiting family members share microbiota with one another and with their dogs

(2013) Se Jin Song et al.   eLife

Significant changes in the skin microbiome mediated by the sport of roller derby

(2013) James F. Meadow et al.   PeerJ

The role of the bacterial microbiome in lung disease

(2013) Robert P Dickson et al.   Expert Review of Respiratory Medicine

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

(2013) Leopoldo N Segal et al.   Microbiome

Community differentiation of the cutaneous microbiota in psoriasis

(2013) Alexander V Alekseyenko et al.   Microbiome

Etiology of community-acquired pneumonia in a population-based study: Link between etiology and patients characteristics, process-of-care, clinical evolution and outcomes

(2012) Alberto Capelastegui et al.   BMC INFECTIOUS DISEASES

The cystic fibrosis airway microbiome

(2012) Harvey R. Rabin et al.   CURRENT OPINION IN PULMONARY MEDICINE

The Neuropathic Diabetic Foot Ulcer Microbiome Is Associated With Clinical Factors

(2012) S. E. Gardner et al.   DIABETES

The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters

(2012) Kjersti Aagaard et al.   FASEB JOURNAL

Effect of the proton pump inhibitor omeprazole on the gastrointestinal bacterial microbiota of healthy dogs

(2012) Jose F. Garcia-Mazcorro et al.   FEMS MICROBIOLOGY ECOLOGY

Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

(2012) H. H. Kong et al.   GENOME RESEARCH

Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing

(2012) Hein Min Tun et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Effects of Dietary Fiber on the Feline Gastrointestinal Metagenome

(2012) Kathleen A. Barry et al.   JOURNAL OF PROTEOME RESEARCH

Association between Granulomatous Colitis in French Bulldogs and InvasiveEscherichia coliand Response to Fluoroquinolone Antimicrobials

(2012) A.C. Manchester et al.   JOURNAL OF VETERINARY INTERNAL MEDICINE

A framework for human microbiome research

(2012)   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

TLR5 Risk-Associated Haplotype for Canine Inflammatory Bowel Disease Confers Hyper-Responsiveness to Flagellin

(2012) Aarti Kathrani et al.   PLoS One

Analyses of the Microbial Diversity across the Human Microbiome

(2012) Kelvin Li et al.   PLoS One

16S rRNA Gene Pyrosequencing Reveals Bacterial Dysbiosis in the Duodenum of Dogs with Idiopathic Inflammatory Bowel Disease

(2012) Jan S. Suchodolski et al.   PLoS One

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

(2012) Susan M. Huse et al.   PLoS One

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

(2012) Anthony A. Fodor et al.   PLoS One

The Fecal Microbiome in Dogs with Acute Diarrhea and Idiopathic Inflammatory Bowel Disease

(2012) Jan S. Suchodolski et al.   PLoS One

The microbiome of the lung

(2012) James M. Beck et al.   Translational Research

Metagenomic analysis of the canine oral cavity as revealed by high-throughput pyrosequencing of the 16S rRNA gene

(2012) Amy Sturgeon et al.   VETERINARY MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Microbiome dynamics of human epidermis following skin barrier disruption

(2012) Patrick LJM Zeeuwen et al.   GENOME BIOLOGY

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

(2011) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The Human Microbiome Project in 2011 and Beyond

(2011) Lita M. Proctor   Cell Host & Microbe

Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats

(2011) Stefanie Handl et al.   FEMS MICROBIOLOGY ECOLOGY

Fermentation in the Human Large Intestine

(2011) George T. Macfarlane et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Diversity of the Human Skin Microbiome Early in Life

(2011) Kimberly A. Capone et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Skin Microbiome: Looking Back to Move Forward

(2011) Heidi H. Kong et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Peripheral education of the immune system by colonic commensal microbiota

(2011) Stephanie K. Lathrop et al.   NATURE

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

The skin microbiome

(2011) Elizabeth A. Grice et al.   NATURE REVIEWS MICROBIOLOGY

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis

(2011) Debby Bogaert et al.   PLoS One

Microbiota regulates immune defense against respiratory tract influenza A virus infection

(2011) T. Ichinohe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Skin microbiome: genomics-based insights into the diversity and role of skin microbes

(2011) Heidi H. Kong   TRENDS IN MOLECULAR MEDICINE

Granulomatous Colitis of Boxer Dogs

(2011) Melanie Craven et al.   VETERINARY CLINICS OF NORTH AMERICA-SMALL ANIMAL PRACTICE

Current evidence of skin barrier dysfunction in human and canine atopic dermatitis

(2011) Rosanna Marsella et al.   VETERINARY DERMATOLOGY

Canine breeds at high risk of developing inflammatory bowel disease in the south-eastern UK

(2011) A. Kathrani et al.   VETERINARY RECORD

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

The ecology of nasal colonization of Streptococcus pneumoniae, Haemophilus influenzae and Staphylococcus aureus: the role of competition and interactions with host's immune response

(2010) Elisa Margolis et al.   BMC MICROBIOLOGY

Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice

(2010) Kelly S Swanson et al.   ISME Journal

COMPANION ANIMALS SYMPOSIUM: Microbes and gastrointestinal health of dogs and cats1

(2010) J. S. Suchodolski   JOURNAL OF ANIMAL SCIENCE

Skin Commensals Amplify the Innate Immune Response to Pathogens by Activation of Distinct Signaling Pathways

(2010) Ines Wanke et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

A prospective study on the clinical features of chronic canine atopic dermatitis and its diagnosis

(2010) Claude Favrot et al.   VETERINARY DERMATOLOGY

Evaluation of mucosal bacteria and histopathology, clinical disease activity and expression of Toll-like receptors in German shepherd dogs with chronic enteropathies

(2010) K. Allenspach et al.   VETERINARY MICROBIOLOGY

The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing

(2009) Jan S Suchodolski et al.   BMC MICROBIOLOGY

Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases

(2009) Christopher D Packey et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Determining Cystic Fibrosis-Affected Lung Microbiology: Comparison of Spontaneous and Serially Induced Sputum Samples by Use of Terminal Restriction Fragment Length Polymorphism Profiling

(2009) Geraint B. Rogers et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Staphylococcal colonization of mucosal and lesional skin sites in atopic and healthy dogs

(2009) Jennifer Fazakerley et al.   VETERINARY DERMATOLOGY

Activation of nuclear factor-κB in dogs with chronic enteropathies

(2009) Nicole Luckschander et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Expression of Toll-like receptor 2 in duodenal biopsies from dogs with inflammatory bowel disease is associated with severity of disease

(2009) L.A. McMahon et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Molecular analysis of the bacterial microbiota in duodenal biopsies from dogs with idiopathic inflammatory bowel disease

(2009) Jan S. Suchodolski et al.   VETERINARY MICROBIOLOGY

Molecular-phylogenetic characterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease

(2008) Panagiotis G. Xenoulis et al.   FEMS MICROBIOLOGY ECOLOGY

A diversity profile of the human skin microbiota

(2008) E. A. Grice et al.   GENOME RESEARCH

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces

(2008) Pauline D Scanlan et al.   ISME Journal

Prevalence and identification of fungal DNA in the small intestine of healthy dogs and dogs with chronic enteropathies

(2008) Jan S. Suchodolski et al.   VETERINARY MICROBIOLOGY

Discerning the Complexity of Community Interactions Using a Drosophila Model of Polymicrobial Infections

(2008) Christopher D. Sibley et al.   PLoS Pathogens

The relationship of mucosal bacteria to duodenal histopathology, cytokine mRNA, and clinical disease activity in cats with inflammatory bowel disease

(2007) S. Janeczko et al.   VETERINARY MICROBIOLOGY