Inter-laboratory study of human in vitro toxicogenomics-based tests as alternative methods for evaluating chemical carcinogenicity: a bioinformatics perspective

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

(2014) Charles Wang et al.   NATURE BIOTECHNOLOGY

Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action

(2014) Daniel Gusenleitner et al.   PLoS One

Advancing the 3Rs in regulatory toxicology – Carcinogenicity testing: Scope for harmonisation and advancing the 3Rs in regulated sectors of the European Union

(2014) Erwin Annys et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

Assessing compound carcinogenicityin vitrousing connectivity mapping

(2013) Florian Caiment et al.   CARCINOGENESIS

Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models

(2013) Tatyana Y. Doktorova et al.   CARCINOGENESIS

Mechanisms of Chemical Carcinogenesis in the Kidneys

(2013) Robert Radford et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Delineation of the Key Aspects in the Regulation of Epithelial Monolayer Formation

(2013) L. Aschauer et al.   MOLECULAR AND CELLULAR BIOLOGY

Oxidative stress induced by potassium bromate exposure results in altered tight junction protein expression in renal proximal tubule cells

(2012) Alice Limonciel et al.   ARCHIVES OF TOXICOLOGY

RNA-Seq Provides New Insights in the Transcriptome Responses Induced by the Carcinogen Benzo[a]pyrene

(2012) J. van Delft et al.   TOXICOLOGICAL SCIENCES

Transcriptomic alterations induced by Ochratoxin A in rat and human renal proximal tubular in vitro models and comparison to a rat in vivo model

(2011) Paul Jennings et al.   ARCHIVES OF TOXICOLOGY

Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction

(2011) Xiaohui Fan et al.   PLoS One

Improving Validation Practices in "Omics" Research

(2011) J. P. A. Ioannidis et al.   SCIENCE

Human Embryonic Stem Cell Derived Hepatocyte-Like Cells as a Tool for In Vitro Hazard Assessment of Chemical Carcinogenicity

(2011) Reha Yildirimman et al.   TOXICOLOGICAL SCIENCES

Lactate is an ideal non-invasive marker for evaluating temporal alterations in cell stress and toxicity in repeat dose testing regimes

(2011) Alice Limonciel et al.   TOXICOLOGY IN VITRO

Moving Forward in Human Cancer Risk Assessment

(2010) Richard S. Paules et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

(2010)   NATURE BIOTECHNOLOGY

Comparison of HepG2 and HepaRG by Whole-Genome Gene Expression Analysis for the Purpose of Chemical Hazard Identification

(2010) Danyel G. J. Jennen et al.   TOXICOLOGICAL SCIENCES

Inter-laboratory comparison of human renal proximal tubule (HK-2) transcriptome alterations due to Cyclosporine A exposure and medium exhaustion

(2009) Paul Jennings et al.   TOXICOLOGY IN VITRO

Scoring multiple toxicological endpoints using a toxicogenomic database

(2009) Naoki Kiyosawa et al.   TOXICOLOGY LETTERS

The carcinoGENOMICS project: Critical selection of model compounds for the development of omics-based in vitro carcinogenicity screening assays

(2008) M VINKEN et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH