Taxonomy and Phylogeny Can Yield Comparable Results in Comparative Paleontological Analyses

Measurement errors should always be incorporated in phylogenetic comparative analysis

(2015) Daniele Silvestro et al.   Methods in Ecology and Evolution

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

Assessing the effect of time-scaling methods on phylogeny-based analyses in the fossil record

(2014) David W. Bapst   PALEOBIOLOGY

Morphological Clocks in Paleontology, and a Mid-Cretaceous Origin of Crown Aves

(2014) M. S. Y. Lee et al.   SYSTEMATIC BIOLOGY

Rates of Dinosaur Body Mass Evolution Indicate 170 Million Years of Sustained Ecological Innovation on the Avian Stem Lineage

(2014) Roger B. J. Benson et al.   PLOS BIOLOGY

Faunal turnover of marine tetrapods during the Jurassic-Cretaceous transition

(2013) Roger B. J. Benson et al.   BIOLOGICAL REVIEWS

On a matching distance between rooted phylogenetic trees

(2013) Damian Bogdanowicz et al.   International Journal of Applied Mathematics and Computer Science

Multiple regression modeling for estimating endocranial volume in extinct Mammalia

(2013) Laura C. Soul et al.   PALEOBIOLOGY

A Simple Method for Estimating Informative Node Age Priors for the Fossil Calibration of Molecular Divergence Time Analyses

(2013) Michael D. Nowak et al.   PLoS One

Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution

(2013) Graham J. Slater et al.   Methods in Ecology and Evolution

Modelling distributions of fossil sampling rates over time, space and taxa: assessment and implications for macroevolutionary studies

(2013) Peter J. Wagner et al.   Methods in Ecology and Evolution

A stochastic rate-calibrated method for time-scaling phylogenies of fossil taxa

(2013) David W. Bapst   Methods in Ecology and Evolution

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

(2013) Robert S. Sansom et al.   Scientific Reports

TreeCmp: Comparison of Trees in Polynomial Time

(2012) Damian Bogdanowicz et al.   Evolutionary Bioinformatics

A survey of palaeontological sampling biases in fishes based on the Phanerozoic record of Great Britain

(2012) Graeme T. Lloyd et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Deep-Time Phylogenetic Clustering of Extinctions in an Evolutionarily Dynamic Clade (Early Jurassic Ammonites)

(2012) Clotilde Hardy et al.   PLoS One

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

How to measure and test phylogenetic signal

(2012) Tamara Münkemüller et al.   Methods in Ecology and Evolution

paleotree: an R package for paleontological and phylogenetic analyses of evolution

(2012) David W. Bapst   Methods in Ecology and Evolution

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism

(2011) T. Jonathan Davies et al.   ECOLOGY

DEVELOPMENTAL TRAIT EVOLUTION IN TRILOBITES

(2011) Giuseppe Fusco et al.   EVOLUTION

IDENTIFYING HETEROGENEITY IN RATES OF MORPHOLOGICAL EVOLUTION: DISCRETE CHARACTER CHANGE IN THE EVOLUTION OF LUNGFISH (SARCOPTERYGII; DIPNOI)

(2011) Graeme T. Lloyd et al.   EVOLUTION

The phylogeny and classification of post-Palaeozoic echinoids

(2011) Andreas Kroh et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

The ghosts of mammals past: biological and geographical patterns of global mammalian extinction across the Holocene

(2011) S. T. Turvey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Heads or tails: staged diversification in vertebrate evolutionary radiations

(2011) L. C. Sallan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

(2011) R. Alexander Pyron   SYSTEMATIC BIOLOGY

Why the Phylogenetic Regression Appears Robust to Tree Misspecification

(2011) Eric A. Stone   SYSTEMATIC BIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Selectivity in Mammalian Extinction Risk and Threat Types: a New Measure of Phylogenetic Signal Strength in Binary Traits

(2010) SUSANNE A. FRITZ et al.   CONSERVATION BIOLOGY

Phylogenetic corrections for morphological disparity analysis: new methodology and case studies

(2010) Stephen L. Brusatte et al.   PALEOBIOLOGY

Sequences, stratigraphy and scenarios: what can we say about the fossil record of the earliest tetrapods?

(2010) M. Friedman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Does encephalization correlate with life history or metabolic rate in Carnivora?

(2009) J. A. Finarelli   Biology Letters

Congruence of morphologically-defined genera with molecular phylogenies

(2009) D. Jablonski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Conservatism of Extinctions in Marine Bivalves

(2009) K. Roy et al.   SCIENCE

Long in the tooth: evolution of sabertooth cat cranial shape

(2008) Graham J. Slater et al.   PALEOBIOLOGY

Extinction and the spatial dynamics of biodiversity

(2008) D. Jablonski   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Superiority, Competition, and Opportunism in the Evolutionary Radiation of Dinosaurs

(2008) Stephen L. Brusatte et al.   SCIENCE