Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection

Type VI secretion system effectors: poisons with a purpose

(2014) Alistair B. Russell et al.   NATURE REVIEWS MICROBIOLOGY

Remodeling of the Intestinal Brush Border Underlies Adhesion and Virulence of an Enteric Pathogen

(2014) X. Zhou et al.   mBio

A View to a Kill: The Bacterial Type VI Secretion System

(2013) Brian T. Ho et al.   Cell Host & Microbe

The Vibrio parahaemolyticus Small RNA RyhB Promotes Production of the Siderophore Vibrioferrin by Stabilizing the Polycistronic mRNA

(2013) T. Tanabe et al.   JOURNAL OF BACTERIOLOGY

Vibrio parahaemolyticus Type VI Secretion System 1 Is Activated in Marine Conditions to Target Bacteria, and Is Differentially Regulated from System 2

(2013) Dor Salomon et al.   PLoS One

A Vibrio parahaemolyticus T3SS Effector Mediates Pathogenesis by Independently Enabling Intestinal Colonization and Inhibiting TAK1 Activation

(2013) Xiaohui Zhou et al.   Cell Reports

Putative type VI secretion systems of Vibrio parahaemolyticus contribute to adhesion to cultured cell monolayers

(2012) Ying Yu et al.   ARCHIVES OF MICROBIOLOGY

Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida

(2012) Geir Å Hansen et al.   BMC GENOMICS

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

The Hydrophilic Translocator for Vibrio parahaemolyticus, T3SS2, Is Also Translocated

(2012) Xiaohui Zhou et al.   INFECTION AND IMMUNITY

Molecular Characterization of Direct Target Genes and cis-Acting Consensus Recognized by Quorum-Sensing Regulator AphA in Vibrio parahaemolyticus

(2012) Fengjun Sun et al.   PLoS One

Inflammation and Disintegration of Intestinal Villi in an Experimental Model for Vibrio parahaemolyticus-Induced Diarrhea

(2012) Jennifer M. Ritchie et al.   PLoS Pathogens

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

VopV, an F-Actin-Binding Type III Secretion Effector, Is Required for Vibrio parahaemolyticus-Induced Enterotoxicity

(2011) Hirotaka Hiyoshi et al.   Cell Host & Microbe

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

Quorum Sensing and Silencing in Vibrio parahaemolyticus

(2011) C. J. Gode-Potratz et al.   JOURNAL OF BACTERIOLOGY

Output Targets and Transcriptional Regulation by a Cyclic Dimeric GMP-Responsive Circuit in the Vibrio parahaemolyticus Scr Network

(2011) R. B. R. Ferreira et al.   JOURNAL OF BACTERIOLOGY

Cyclic Dimeric GMP-Mediated Decisions in Surface-Grown Vibrio parahaemolyticus: a Different Kind of Motile-to-Sessile Transition

(2011) M. Gomelsky   JOURNAL OF BACTERIOLOGY

Vibrio parahaemolyticus cell biology and pathogenicity determinants

(2011) Christopher A. Broberg et al.   MICROBES AND INFECTION

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

Contribution of Vibrio parahaemolyticus Virulence Factors to Cytotoxicity, Enterotoxicity, and Lethality in Mice

(2010) H. Hiyoshi et al.   INFECTION AND IMMUNITY

Calcium and Iron Regulate Swarming and Type III Secretion in Vibrio parahaemolyticus

(2010) C. J. Gode-Potratz et al.   JOURNAL OF BACTERIOLOGY

Surface sensing in Vibrio parahaemolyticus triggers a programme of gene expression that promotes colonization and virulence

(2010) Cindy J. Gode-Potratz et al.   MOLECULAR MICROBIOLOGY

Two Regulators of Vibrio parahaemolyticus Play Important Roles in Enterotoxicity by Controlling the Expression of Genes in the Vp-PAI Region

(2010) Toshio Kodama et al.   PLoS One

Bile Acid-Induced Virulence Gene Expression of Vibrio parahaemolyticus Reveals a Novel Therapeutic Potential for Bile Acid Sequestrants

(2010) Kazuyoshi Gotoh et al.   PLoS One

Back to the Future: Studying Cholera Pathogenesis Using Infant Rabbits

(2010) J. M. Ritchie et al.   mBio

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Comparative Genomic Analysis Using Microarray Demonstrates a Strong Correlation between the Presence of the 80-Kilobase Pathogenicity Island and Pathogenicity in Kanagawa Phenomenon-Positive Vibrio parahaemolyticus Strains

(2008) K. Izutsu et al.   INFECTION AND IMMUNITY

Type III secretion system 1 genes inVibrio parahaemolyticusare positively regulated by ExsA and negatively regulated by ExsD

(2008) Xiaohui Zhou et al.   MOLECULAR MICROBIOLOGY

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

(2008) N. Sudarsan et al.   SCIENCE