Genomic HEXploring allows landscaping of novel potential splicing regulatory elements

A Pair of RNA-Binding Proteins Controls Networks of Splicing Events Contributing to Specialization of Neural Cell Types

(2014) Adam D. Norris et al.   MOLECULAR CELL

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L

(2014) Oliver Rossbach et al.   RNA Biology

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing

(2014) Matthew Mort et al.   GENOME BIOLOGY

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing

(2014) Matteo Cereda et al.   GENOME BIOLOGY

Frequent Gain and Loss of Intronic Splicing Regulatory Elements during the Evolution of Vertebrates

(2012) Rodger B. Voelker et al.   Genome Biology and Evolution

An Intronic G Run within HIV-1 Intron 2 Is Critical for Splicing Regulation of vif mRNA

(2012) M. Widera et al.   JOURNAL OF VIROLOGY

Tra2-Mediated Recognition of HIV-1 5' Splice Site D3 as a Key Factor in the Processing of vpr mRNA

(2012) S. Erkelenz et al.   JOURNAL OF VIROLOGY

RBFOX2 Is an Important Regulator of Mesenchymal Tissue-Specific Splicing in both Normal and Cancer Tissues

(2012) J. P. Venables et al.   MOLECULAR AND CELLULAR BIOLOGY

Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms

(2012) S. Erkelenz et al.   RNA

The HIV-1 major splice donor D1 is activated by splicing enhancer elements within the leader region and the p17-inhibitory sequence

(2012) Corinna Asang et al.   VIROLOGY

Integrative Genome-wide Analysis Reveals Cooperative Regulation of Alternative Splicing by hnRNP Proteins

(2012) Stephanie C. Huelga et al.   Cell Reports

Quantitative evaluation of all hexamers as exonic splicing elements

(2011) Shengdong Ke et al.   GENOME RESEARCH

Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes

(2011) K. H. Lim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the splicing code

(2010) Yoseph Barash et al.   NATURE

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB

(2010) Miriam Llorian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Spliceosome: Design Principles of a Dynamic RNP Machine

(2009) Markus C. Wahl et al.   CELL

Comparative in silico analyses and experimental validation of novel splice site and missense mutations in the genes MLH1 and MSH2

(2009) Beate Betz et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

Splicing of designer exons reveals unexpected complexity in pre-mRNA splicing

(2009) X. H.-F. Zhang et al.   RNA

Diagnostics of pathogenic splicing mutations: does bioinformatics cover all bases?

(2008) Linda Hartmann   Frontiers in Bioscience-Landmark

Positive selection acting on splicing motifs reflects compensatory evolution

(2008) S. Ke et al.   GENOME RESEARCH

Negative and Positive mRNA Splicing Elements Act Competitively To Regulate Human Immunodeficiency Virus Type 1 Vif Gene Expression

(2008) C. M. Exline et al.   JOURNAL OF VIROLOGY

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

(2008) John C Castle et al.   NATURE GENETICS

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Insights into the selective activation of alternatively used splice acceptors by the human immunodeficiency virus type-1 bidirectional splicing enhancer

(2008) C. Asang et al.   NUCLEIC ACIDS RESEARCH

Tissue-specific splicing factor gene expression signatures

(2008) Ana Rita Grosso et al.   NUCLEIC ACIDS RESEARCH

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code

(2008) Z. Wang et al.   RNA