SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples

The value of Ki-67 antigen expression in tissue microarray method in prediction prognosis of patients with endometrioid endometrial cancer

(2015) Leszek Gottwald et al.   Ginekologia Polska

CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data

(2014) Daogang Guan et al.   BIOINFORMATICS

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment

(2013) Hari Krishna Yalamanchili et al.   BIOINFORMATICS

Differential network analysis for the identification of condition-specific pathway activity and regulation

(2013) Gennaro Gambardella et al.   BIOINFORMATICS

mRNA Splicing Variants: Exploiting Modularity to Outwit Cancer Therapy

(2013) S. M. Dehm   CANCER RESEARCH

Canonical correlation analysis for RNA-seq co-expression networks

(2013) Shengjun Hong et al.   NUCLEIC ACIDS RESEARCH

A Microarray-Based Gene Expression Analysis to Identify Diagnostic Biomarkers for Unknown Primary Cancer

(2013) Issei Kurahashi et al.   PLoS One

RNA sequencing of cancer reveals novel splicing alterations

(2013) Jeyanthy Eswaran et al.   Scientific Reports

Likelihood Ratio Test for Detecting Gene (G)-Environment (E) Interactions Under an Additive Risk Model Exploiting G-E Independence for Case-Control Data

(2012) S. S. Han et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Utilizing RNA-Seq data for de novo coexpression network inference

(2012) Ovidiu D. Iancu et al.   BIOINFORMATICS

A novel neural response algorithm for protein function prediction

(2012) Hari Yalamanchili et al.   BMC Systems Biology

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Testing the independence of sets of large-dimensional variables

(2012) DanDan Jiang et al.   Science China-Mathematics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor

(2011) Jing Qin et al.   NUCLEIC ACIDS RESEARCH

Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer

(2010) Ruben Pio et al.   BMC GENOMICS

Proteomic Characterization of Novel Alternative Splice Variant Proteins in Human Epidermal Growth Factor Receptor 2/neu–Induced Breast Cancers

(2010) Rajasree Menon et al.   CANCER RESEARCH

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

A human functional protein interaction network and its application to cancer data analysis

(2010) Guanming Wu et al.   GENOME BIOLOGY

TiGER: a database for tissue-specific gene expression and regulation

(2008) Xiong Liu et al.   BMC BIOINFORMATICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS