Canonical correlation analysis for RNA-seq co-expression networks

Utilizing RNA-Seq data for de novo coexpression network inference

(2012) Ovidiu D. Iancu et al.   BIOINFORMATICS

Editorial: Systems biology and personalized medicine - the future is now

(2012) Charles Auffray et al.   Biotechnology Journal

A Landscape of Driver Mutations in Melanoma

(2012) Eran Hodis et al.   CELL

RNA-Seq and human complex diseases: recent accomplishments and future perspectives

(2012) Valerio Costa et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

RNA-seq analysis of the C. briggsae transcriptome

(2012) B. Uyar et al.   GENOME RESEARCH

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data

(2011) D. A. Skelly et al.   GENOME RESEARCH

Potential mechanism of interleukin-8 production from lung cancer cells: An involvement of EGF-EGFR-PI3K-Akt-Erk pathway

(2011) Yong Zhang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Assembly of the presenilin γ-/ε-secretase complex

(2011) P. St George-Hyslop et al.   JOURNAL OF NEUROCHEMISTRY

AlleleSeq: analysis of allele-specific expression and binding in a network framework

(2011) J. Rozowsky et al.   Molecular Systems Biology

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Genetic and Metabolic Characterization of Insomnia

(2011) Hyo-Jeong Ban et al.   PLoS One

Integrative Network Biology: Graph Prototyping for Co-Expression Cancer Networks

(2011) Karl G. Kugler et al.   PLoS One

Erratum: Genetic regulation of Nrnx1 expression: an integrative cross-species analysis of schizophrenia candidate genes

(2011) K Mozhui et al.   Translational Psychiatry

Genome-Wide Association Study of Suicide Attempts in Mood Disorder Patients

(2010) Roy H. Perlis et al.   AMERICAN JOURNAL OF PSYCHIATRY

Analysis of Alzheimer's disease severity across brain regions by topological analysis of gene co-expression networks

(2010) Monika Ray et al.   BMC Systems Biology

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

(2010) Hugues Richard et al.   NUCLEIC ACIDS RESEARCH

NMDA Receptor Hypofunction Induces Dysfunctions of Energy Metabolism And Semaphorin Signaling in Rats: A Synaptic Proteome Study

(2010) Kejun Zhou et al.   SCHIZOPHRENIA BULLETIN

GeneCards Version 3: the human gene integrator

(2010) M. Safran et al.   Database-The Journal of Biological Databases and Curation

SNPs Associated with Cerebrospinal Fluid Phospho-Tau Levels Influence Rate of Decline in Alzheimer's Disease

(2010) Carlos Cruchaga et al.   PLoS Genetics

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Co-expression networks: graph properties and topological comparisons

(2009) Ramon Xulvi-Brunet et al.   BIOINFORMATICS

Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis

(2009) Anna C Need et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Partial Correlation Estimation by Joint Sparse Regression Models

(2009) Jie Peng et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts

(2009) Chisato Yamasaki et al.   NUCLEIC ACIDS RESEARCH

SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms

(2008) C. Chelala et al.   BIOINFORMATICS

Shared Gene Expression Alterations in Schizophrenia and Bipolar Disorder

(2008) Ling Shao et al.   BIOLOGICAL PSYCHIATRY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS