The dynamics of genome replication using deep sequencing

Genetic and epigenetic determinants of DNA replication origins, position and activation

(2013) Marcel Méchali et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data

(2013) Ryuichiro Nakato et al.   GENES TO CELLS

The Spatiotemporal Program of Replication in the Genome of Lachancea kluyveri

(2013) Nicolas Agier et al.   Genome Biology and Evolution

Quantitative, Genome-Wide Analysis of Eukaryotic Replication Initiation and Termination

(2013) Sean R. McGuffee et al.   MOLECULAR CELL

Kinetochores Coordinate Pericentromeric Cohesion and Early DNA Replication by Cdc7-Dbf4 Kinase Recruitment

(2013) Toyoaki Natsume et al.   MOLECULAR CELL

Avoiding chromosome pathology when replication forks collide

(2013) Christian J. Rudolph et al.   NATURE

Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts

(2013) Timothy J. Newman et al.   NUCLEIC ACIDS RESEARCH

DNA Replication Timing

(2013) N. Rhind et al.   Cold Spring Harbor Perspectives in Biology

A Link between ORC-Origin Binding Mechanisms and Origin Activation Time Revealed in Budding Yeast

(2013) Timothy Hoggard et al.   PLoS Genetics

Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation

(2012) Amnon Koren et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae

(2012) Simon R.V. Knott et al.   CELL

Conservation of replication timing reveals global and local regulation of replication origin activity

(2012) C. A. Muller et al.   GENOME RESEARCH

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast

(2012) I. Liachko et al.   GENOME RESEARCH

Maintaining replication origins in the face of genomic change

(2012) S. C. Di Rienzi et al.   GENOME RESEARCH

Replisome Stability at Defective DNA Replication Forks Is Independent of S Phase Checkpoint Kinases

(2012) Giacomo De Piccoli et al.   MOLECULAR CELL

Unraveling cell type–specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs

(2012) Emilie Besnard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mathematical modeling of genome replication

(2012) Renata Retkute et al.   PHYSICAL REVIEW E

Genome-wide identification and characterization of replication origins by deep sequencing

(2012) Jia Xu et al.   GENOME BIOLOGY

The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation

(2011) Hui-Yong Lian et al.   MOLECULAR BIOLOGY OF THE CELL

OriDB, the DNA replication origin database updated and extended

(2011) C. C. Siow et al.   NUCLEIC ACIDS RESEARCH

Dynamics of DNA Replication in Yeast

(2011) Renata Retkute et al.   PHYSICAL REVIEW LETTERS

Conserved nucleosome positioning defines replication origins

(2010) M. L. Eaton et al.   GENES & DEVELOPMENT

MRC1-dependent scaling of the budding yeast DNA replication timing program

(2010) A. Koren et al.   GENOME RESEARCH

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

(2010) L. D. Mesner et al.   GENOME RESEARCH

GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome

(2010) Matthew D Sekedat et al.   Molecular Systems Biology

Evaluating genome-scale approaches to eukaryotic DNA replication

(2010) David M. Gilbert   NATURE REVIEWS GENETICS

Eukaryotic DNA replication origins: many choices for appropriate answers

(2010) Marcel Méchali   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mathematical modelling of whole chromosome replication

(2010) Alessandro P. S. de Moura et al.   NUCLEIC ACIDS RESEARCH

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

(2009) S. R.V. Knott et al.   GENES & DEVELOPMENT

GIMSAN: a Gibbs motif finder with significance analysis

(2008) P. Ng et al.   BIOINFORMATICS

Analysis of Chromosome III Replicators Reveals an Unusual Structure for the ARS318 Silencer Origin and a Conserved WTW Sequence within the Origin Recognition Complex Binding Site

(2008) F. Chang et al.   MOLECULAR AND CELLULAR BIOLOGY

An ARS Element Inhibits DNA Replication through a SIR2-Dependent Mechanism

(2008) Amber Crampton et al.   MOLECULAR CELL