Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli

Study of E. coli Hfq’s RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents

(2012) Martina Doetsch et al.   NUCLEIC ACIDS RESEARCH

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair

(2012) K. Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?

(2012) Andreas Richter et al.   RNA Biology

The huge world of small RNAs: Regulating networks of microRNAs (Review)

(2011) Zs. Rácz et al.   ACTA PHYSIOLOGICA HUNGARICA

Despite Similar Binding to the Hfq Protein Regulatory RNAs Widely Differ in Their Competition Performance

(2011) Mikołaj Olejniczak   BIOCHEMISTRY

Small RNAs in early mammalian development: from gametes to gastrulation

(2011) N. Suh et al.   DEVELOPMENT

Accessibility and Evolutionary Conservation Mark Bacterial Small-RNA Target-Binding Regions

(2011) A. Peer et al.   JOURNAL OF BACTERIOLOGY

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Competition among Hfq-binding small RNAs in Escherichia coli

(2011) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Artificial trans -encoded small non-coding RNAs specifically silence the selected gene expression in bacteria

(2011) Shuai Man et al.   NUCLEIC ACIDS RESEARCH

RNApredator: fast accessibility-based prediction of sRNA targets

(2011) Florian Eggenhofer et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Engineering Artificial Small RNAs for Conditional Gene Silencing in Escherichia coli

(2011) Vandana Sharma et al.   ACS Synthetic Biology

Rho-dependent Termination ofssrS(6S RNA) Transcription inEscherichia coli

(2010) Huiseok Chae et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Shine-Dalgarno sequence enhances the efficiency of lacZ repression by artificial anti-lac antisense RNAs in Escherichia coli

(2010) Alessandra Stefan et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA

(2010) Kimika Maki et al.   MOLECULAR MICROBIOLOGY

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

(2010) C. Smith et al.   NUCLEIC ACIDS RESEARCH

Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family

(2010) Kook Han et al.   NUCLEIC ACIDS RESEARCH

An Upstream Hfq Binding Site in the fhlA mRNA Leader Region Facilitates the OxyS-fhlA Interaction

(2010) Nilshad N. Salim et al.   PLoS One

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1

(2009) Andreas S. Richter et al.   BIOINFORMATICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Activation of gene expression by small RNA

(2009) Kathrin S. Fröhlich et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial chromosome-encoded small regulatory RNAs

(2009) Sabine Brantl   Future Microbiology

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

(2009) Verena Pfeiffer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Effect of salt and RNA structure on annealing and strand displacement by Hfq

(2009) J. F. Hopkins et al.   NUCLEIC ACIDS RESEARCH

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

The role of the small regulatory RNA GcvB in GcvB/mRNA posttranscriptional regulation of oppA and dppA in Escherichia coli

(2008) Sarah C. Pulvermacher et al.   FEMS MICROBIOLOGY LETTERS

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

(2008) Elizabeth M. Fozo et al.   MOLECULAR MICROBIOLOGY

TargetRNA: a tool for predicting targets of small RNA action in bacteria

(2008) B. Tjaden   NUCLEIC ACIDS RESEARCH