SPACER: server for predicting allosteric communication and effects of regulation

Thermodynamics of allostery paves a way to allosteric drugs

(2013) Igor N. Berezovsky   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Unraveling Hidden Regulatory Sites in Structurally Homologous Metalloproteases

(2013) Yael Udi et al.   JOURNAL OF MOLECULAR BIOLOGY

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

Quantitative Assessment of Protein Structural Models by Comparison of H/D Exchange MS Data with Exchange Behavior Accurately Predicted by DXCOREX

(2011) Tong Liu et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication

(2011) Simon Mitternacht et al.   PLoS Computational Biology

Binding Leverage as a Molecular Basis for Allosteric Regulation

(2011) Simon Mitternacht et al.   PLoS Computational Biology

A geometry-based generic predictor for catalytic and allosteric sites

(2010) S. Mitternacht et al.   PROTEIN ENGINEERING DESIGN & SELECTION

An Ensemble View of Allostery

(2010) V. J. Hilser   SCIENCE

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

(2010) Peter Csermely et al.   TRENDS IN BIOCHEMICAL SCIENCES

Computation of Conformational Coupling in Allosteric Proteins

(2009) Brian A. Kidd et al.   PLoS Computational Biology

Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

(2008) K.-i. Okazaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allostery and cooperativity revisited

(2008) Qiang Cui et al.   PROTEIN SCIENCE