Mammalian NUMT insertion is non-random

Parameters for accurate genome alignment

(2012) Martin C Frith et al.   BMC BIOINFORMATICS

DNA cleavage and opening reactions of human topoisomerase II  are regulated via Mg2+-mediated dynamic bending of gate-DNA

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human mitochondrial transcription factor A functions in both nuclei and mitochondria and regulates cancer cell growth

(2011) Bin Han et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Human Mitochondrial Transcriptome

(2011) Tim R. Mercer et al.   CELL

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

What fraction of the human genome is functional?

(2011) C. P. Ponting et al.   GENOME RESEARCH

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

(2011) L. Song et al.   GENOME RESEARCH

The Structural Basis for Substrate Recognition by Mammalian Polynucleotide Kinase 3′ Phosphatase

(2011) Fernando Garces et al.   MOLECULAR CELL

Determinants of nucleosome organization in primary human cells

(2011) Anton Valouev et al.   NATURE

TFAM forces mtDNA to make a U-turn

(2011) B Martin Hallberg et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification

(2011) Ashley H. Hardin et al.   NUCLEIC ACIDS RESEARCH

DNA double-strand breaks in heterochromatin elicit fast repair protein recruitment, histone H2AX phosphorylation and relocation to euchromatin

(2011) Burkhard Jakob et al.   NUCLEIC ACIDS RESEARCH

Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA

(2011) C. Kukat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of heterochromatin on DNA double strand break repair: Getting the strong, silent type to relax

(2010) Aaron A. Goodarzi et al.   DNA REPAIR

Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe

(2010) S. Lenglez et al.   GENOME RESEARCH

A new repeat-masking method enables specific detection of homologous sequences

(2010) Martin C. Frith   NUCLEIC ACIDS RESEARCH

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

Sequence-Dependent DNA Flexibility Mediates DNase I Cleavage

(2009) Brahim Heddi et al.   JOURNAL OF MOLECULAR BIOLOGY

A Comparative Approach Shows Differences in Patterns of Numt Insertion During Hominoid Evolution

(2009) M. I. Jensen-Seaman et al.   JOURNAL OF MOLECULAR EVOLUTION

Significant correlation of species longevity with DNA double strand break recognition but not with telomere length

(2009) Antonello Lorenzini et al.   MECHANISMS OF AGEING AND DEVELOPMENT

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

In vivo methylation of mtDNA reveals the dynamics of protein–mtDNA interactions

(2009) Adriana P. Rebelo et al.   NUCLEIC ACIDS RESEARCH

Ancient mtDNA Genetic Variants Modulate mtDNA Transcription and Replication

(2009) Sarit Suissa et al.   PLoS Genetics

Comparative analysis of mitochondrial fragments transferred to the nucleus in vertebrate

(2008) Hongying Qu et al.   Journal of Genetics and Genomics

Genome instability: a mechanistic view of its causes and consequences

(2008) Andrés Aguilera et al.   NATURE REVIEWS GENETICS

The whole alignment and nothing but the alignment: the problem of spurious alignment flanks

(2008) Martin C. Frith et al.   NUCLEIC ACIDS RESEARCH

Numt-Mediated Double-Strand Break Repair Mitigates Deletions during Primate Genome Evolution

(2008) Einat Hazkani-Covo et al.   PLoS Genetics