SwissSidechain: a molecular and structural database of non-natural sidechains

Expanding molecular modeling and design tools to non-natural sidechains

(2012) David Gfeller et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design

(2012) P. Douglas Renfrew et al.   PLoS One

Total Chemical Synthesis of Biologically Active Vascular Endothelial Growth Factor

(2011) Kalyaneswar Mandal et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Probing Protein-Protein Interactions with a Genetically Encoded Photo-crosslinking Amino Acid

(2011) Hui-wang Ai et al.   CHEMBIOCHEM

The multiple-specificity landscape of modular peptide recognition domains

(2011) D. Gfeller et al.   Molecular Systems Biology

Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation

(2011) Stuart A. Sievers et al.   NATURE

Parkinson's Disease Therapeutics: New Developments and Challenges Since the Introduction of Levodopa

(2011) Yoland Smith et al.   NEUROPSYCHOPHARMACOLOGY

PubChem's BioAssay Database

(2011) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database

(2011) Guillem Revilla-López et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Open Babel: An open chemical toolbox

(2011) Noel M O'Boyle et al.   Journal of Cheminformatics

NCAD, a Database Integrating the Intrinsic Conformational Preferences of Non-Coded Amino Acids

(2010) Guillem Revilla-López et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome

(2010) Heinz Neumann et al.   NATURE

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

From combinatorial peptide selection to drug prototype (II): Targeting the epidermal growth factor receptor pathway

(2010) M. Cardo-Vila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carfilzomib can induce tumor cell death through selective inhibition of the chymotrypsin-like activity of the proteasome

(2009) F. Parlati et al.   BLOOD

Expanding the Genetic Code for Biological Studies

(2009) Qian Wang et al.   CHEMISTRY & BIOLOGY

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Modeling of peptides containing D-amino acids: implications on cyclization

(2009) Austin B. Yongye et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Mirror image phage display—a method to generate d-peptide ligands for use in diagnostic or therapeutical applications

(2009) Susanne Aileen Funke et al.   Molecular BioSystems

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

(2009) Raffi Tonikian et al.   PLOS BIOLOGY