The architecture of eukaryotic translation

A computational framework for the design of optimal protein synthesis

(2012) Julien Racle et al.   BIOTECHNOLOGY AND BIOENGINEERING

Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles

(2012) Philip Greulich et al.   PHYSICAL REVIEW E

A novel and versatile computational tool to model translation

(2011) D. Chu et al.   BIOINFORMATICS

Molecular Mechanism of Scanning and Start Codon Selection in Eukaryotes

(2011) A. G. Hinnebusch   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae

(2011) Dominique Chu et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic 5S rRNA biogenesis

(2011) Martin Ciganda et al.   Wiley Interdisciplinary Reviews-RNA

Structure and Dynamics of a Processive Brownian Motor: The Translating Ribosome

(2010) Joachim Frank et al.   Annual Review of Biochemistry

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Global and local depletion of ternary complex limits translational elongation

(2010) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

Role of the particle’s stepping cycle in an asymmetric exclusion process: A model of mRNA translation

(2010) L. Ciandrini et al.   PHYSICAL REVIEW E

A quantitative model for mRNA translation in Saccharomyces cerevisiae

(2010) Tao You et al.   YEAST

Queueing Phase Transition: Theory of Translation

(2009) M. Carmen Romano et al.   PHYSICAL REVIEW LETTERS

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Effects of Codon Distributions and tRNA Competition on Protein Translation

(2008) Hermioni Zouridis et al.   BIOPHYSICAL JOURNAL

Absolute quantification of the budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs

(2008) Fumihito Miura et al.   BMC GENOMICS

A quantitative estimation of the global translational activity in logarithmically growing yeast cells

(2008) Tobias von der Haar   BMC Systems Biology

The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon

(2008) Yoshiho Ikeuchi et al.   EMBO JOURNAL

Single-RNA counting reveals alternative modes of gene expression in yeast

(2008) Daniel Zenklusen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

MODOMICS: a database of RNA modification pathways. 2008 update

(2008) A. Czerwoniec et al.   NUCLEIC ACIDS RESEARCH

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE