GPSy: a cross-species gene prioritization system for conserved biological processes—application in male gamete development

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets

(2011) Daniel Baron et al.   BIOINFORMATICS

PINTA: a web server for network-based gene prioritization from expression data

(2011) D. Nitsch et al.   NUCLEIC ACIDS RESEARCH

Génie: literature-based gene prioritization at multi genomic scale

(2011) Jean-Fred Fontaine et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Profiling spermatogenic failure in adult testes bearing Sox9-deficient Sertoli cells identifies genes involved in feminization, inflammation and stress

(2011) Aurélie Lardenois et al.   Reproductive Biology and Endocrinology

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation

(2011) Anthony ML Liekens et al.   GENOME BIOLOGY

A guide to web tools to prioritize candidate genes

(2010) L.-C. Tranchevent et al.   BRIEFINGS IN BIOINFORMATICS

Arginine Methylation of Vasa Protein Is Conserved across Phyla

(2010) Yohei Kirino et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Comparative Toxicogenomics Database: update 2011

(2010) A. P. Davis et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

OMA 2011: orthology inference among 1000 complete genomes

(2010) A. M. Altenhoff et al.   NUCLEIC ACIDS RESEARCH

The use of gene ontology evidence codes in preventing classifier assessment bias

(2009) Mark F. Rogers et al.   BIOINFORMATICS

A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases–schizophrenia as a case

(2009) Jingchun Sun et al.   BIOINFORMATICS

AQUA: automated quality improvement for multiple sequence alignments

(2009) J. Muller et al.   BIOINFORMATICS

MIMAS 3.0 is a Multiomics Information Management and Annotation System

(2009) Alexandre Gattiker et al.   BMC BIOINFORMATICS

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning

(2009) Y. Yoshida et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology in 2010: extensions and refinements

(2009)   NUCLEIC ACIDS RESEARCH

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

WormBase: a comprehensive resource for nematode research

(2009) Todd W. Harris et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Systematic biological prioritization after a genome-wide association study: an application to nicotine dependence

(2008) Scott F. Saccone et al.   BIOINFORMATICS

PGMapper: a web-based tool linking phenotype to genes

(2008) Q. Xiong et al.   BIOINFORMATICS

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology

(2008) Frédéric Chalmel et al.   BMC BIOINFORMATICS

Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases

(2008) Wei Yu et al.   BMC BIOINFORMATICS

Algorithm of OMA for large-scale orthology inference

(2008) Alexander CJ Roth et al.   BMC BIOINFORMATICS

Targeted deletion of Tssk1 and 2 causes male infertility due to haploinsufficiency

(2008) Bingfang Xu et al.   DEVELOPMENTAL BIOLOGY

CANDID: a flexible method for prioritizing candidate genes for complex human traits

(2008) Janna E. Hutz et al.   GENETIC EPIDEMIOLOGY

The biology of infertility: research advances and clinical challenges

(2008) Martin M Matzuk et al.   NATURE MEDICINE

ENDEAVOUR update: a web resource for gene prioritization in multiple species

(2008) L.-C. Tranchevent et al.   NUCLEIC ACIDS RESEARCH

GeneDistiller—Distilling Candidate Genes from Linkage Intervals

(2008) Dominik Seelow et al.   PLoS One

The quest for orthologs: finding the corresponding gene across genomes

(2008) Arnold Kuzniar et al.   TRENDS IN GENETICS