Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs

vHOG, a multispecies vertebrate ontology of homologous organs groups

(2012) A. Niknejad et al.   BIOINFORMATICS

microRNA complements in deuterostomes: origin and evolution of microRNAs

(2011) Florent Campo-Paysaa et al.   EVOLUTION & DEVELOPMENT

Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques

(2011) W.-L. Su et al.   Molecular Systems Biology

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

MicroRNAs can generate thresholds in target gene expression

(2011) Shankar Mukherji et al.   NATURE GENETICS

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

(2011) Shivendra Kishore et al.   NATURE METHODS

Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs

(2011) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA-Driven Developmental Remodeling in the Brain Distinguishes Humans from Other Primates

(2011) Mehmet Somel et al.   PLOS BIOLOGY

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

(2011) Graciana Diez-Roux et al.   PLOS BIOLOGY

MicroRNA Expression and Regulation in Human, Chimpanzee, and Macaque Brains

(2011) Hai Yang Hu et al.   PLoS Genetics

Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy

(2010) Gilles Parmentier et al.   BIOINFORMATICS

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

(2010) H. R. Chiang et al.   GENES & DEVELOPMENT

Origins and Evolution of MicroRNA Genes in Drosophila Species

(2010) Masafumi Nozawa et al.   Genome Biology and Evolution

MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain

(2010) M. Somel et al.   GENOME RESEARCH

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

(2010) E. Berezikov et al.   GENOME RESEARCH

Analysis of microRNA knockouts in mice

(2010) C. Y. Park et al.   HUMAN MOLECULAR GENETICS

The mouse Gene Expression Database (GXD): 2011 update

(2010) J. H. Finger et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Computational methods to identify miRNA targets

(2010) Molly Hammell   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution

(2010) Jean-François Gout et al.   PLoS Genetics

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

(2009) Kevin J. Peterson et al.   BIOESSAYS

Lost in translation: an assessment and perspective for computational microRNA target identification

(2009) Panagiotis Alexiou et al.   BIOINFORMATICS

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Evolution under canalization and the dual roles of microRNAs--A hypothesis

(2009) C.-I Wu et al.   GENOME RESEARCH

Simultaneous expansions of microRNAs and protein-coding genes by gene/genome duplications in early vertebrates

(2009) Xun Gu et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Lowly Expressed Human MicroRNA Genes Evolve Rapidly

(2009) Han Liang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predicting microRNA targets and functions: traps for the unwary

(2009) William Ritchie et al.   NATURE METHODS

In situ hybridization is a necessary experimental complement to microRNA (miRNA) expression profiling in the human brain

(2009) Peter T. Nelson et al.   NEUROSCIENCE LETTERS

MirZ: an integrated microRNA expression atlas and target prediction resource

(2009) J. Hausser et al.   NUCLEIC ACIDS RESEARCH

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

(2009) Y. I. Wolf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

The evolution and functional diversification of animal microRNA genes

(2008) Na Liu et al.   CELL RESEARCH

miR-122, a paradigm for the role of microRNAs in the liver

(2008) Muriel Girard et al.   JOURNAL OF HEPATOLOGY

Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila

(2008) J. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

The birth and death of microRNA genes in Drosophila

(2008) Jian Lu et al.   NATURE GENETICS

Biological principles of microRNA-mediated regulation: shared themes amid diversity

(2008) Alex S. Flynt et al.   NATURE REVIEWS GENETICS

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs and the advent of vertebrate morphological complexity

(2008) A. M. Heimberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A GATA-1-regulated microRNA locus essential for erythropoiesis

(2008) L. C. Dore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites

(2008) R. Sandberg et al.   SCIENCE

Origins and evolution of eukaryotic RNA interference

(2008) S SHABALINA et al.   TRENDS IN ECOLOGY & EVOLUTION

Developmental Constraints on Vertebrate Genome Evolution

(2008) Julien Roux et al.   PLoS Genetics