Pathway for insertion of amphiphilic nanoparticles into defect-free lipid bilayers from atomistic molecular dynamics simulations

Enhancing Radiotherapy by Lipid Nanocapsule-Mediated Delivery of Amphiphilic Gold Nanoparticles to Intracellular Membranes

(2014) Yu-Sang Yang et al.   ACS Nano

Interactions of Gold Nanoparticles with a Phospholipid Monolayer Membrane on Mercury

(2014) Gabriel J. Gordillo et al.   ACS Nano

Membrane-Induced Structural Rearrangement and Identification of a Novel Membrane Anchor in Talin F2F3

(2014) Mark J. Arcario et al.   BIOPHYSICAL JOURNAL

Peptide-induced membrane curvature in edge-stabilized open bilayers: A theoretical and molecular dynamics study

(2014) Martina Pannuzzo et al.   JOURNAL OF CHEMICAL PHYSICS

Fusion of Ligand-Coated Nanoparticles with Lipid Bilayers: Effect of Ligand Flexibility

(2014) Reid C. Van Lehn et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Membrane-Embedded Nanoparticles Induce Lipid Rearrangements Similar to Those Exhibited by Biological Membrane Proteins

(2014) Reid C. Van Lehn et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Cationic Au Nanoparticle Binding with Plasma Membrane-like Lipid Bilayers: Potential Mechanism for Spontaneous Permeation to Cells Revealed by Atomistic Simulations

(2014) Elena Heikkilä et al.   Journal of Physical Chemistry C

Polyunsaturated phospholipids facilitate membrane deformation and fission by endocytic proteins

(2014) M. Pinot et al.   SCIENCE

Theoretical and Computational Investigations of Nanoparticle-Biomembrane Interactions in Cellular Delivery

(2014) Hong-ming Ding et al.   Small

Lipid tail protrusions mediate the insertion of nanoparticles into model cell membranes

(2014) Reid C. Van Lehn et al.   Nature Communications

A sub-nanometre view of how membrane curvature and composition modulate lipid packing and protein recruitment

(2014) Stefano Vanni et al.   Nature Communications

Membrane Partitioning of Anionic, Ligand-Coated Nanoparticles Is Accompanied by Ligand Snorkeling, Local Disordering, and Cholesterol Depletion

(2014) Paraskevi Gkeka et al.   PLoS Computational Biology

Cell Membranes Open “Doors” for Cationic Nanoparticles/Biomolecules: Insights into Uptake Kinetics

(2013) Jiaqi Lin et al.   ACS Nano

Conical Lipids in Flat Bilayers Induce Packing Defects Similar to that Induced by Positive Curvature

(2013) Lydie Vamparys et al.   BIOPHYSICAL JOURNAL

Cholesterol Translocation in a Phospholipid Membrane

(2013) Amit Choubey et al.   BIOPHYSICAL JOURNAL

Amphipathic Lipid Packing Sensor Motifs: Probing Bilayer Defects with Hydrophobic Residues

(2013) Stefano Vanni et al.   BIOPHYSICAL JOURNAL

Simulation Studies of Structure and Edge Tension of Lipid Bilayer Edges: Effects of Tail Structure and Force-Field

(2013) Ana West et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Structure of Mixed-Monolayer-Protected Nanoparticles in Aqueous Salt Solution from Atomistic Molecular Dynamics Simulations

(2013) Reid C. Van Lehn et al.   Journal of Physical Chemistry C

Homogeneous Hydrophobic–Hydrophilic Surface Patterns Enhance Permeation of Nanoparticles through Lipid Membranes

(2013) Paraskevi Gkeka et al.   Journal of Physical Chemistry Letters

Driving Force for Water Permeation Across Lipid Membranes

(2013) Baofu Qiao et al.   Journal of Physical Chemistry Letters

Integration of Gold Nanoparticles into Bilayer Structures via Adaptive Surface Chemistry

(2013) Hee-Young Lee et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Effect of Functionalized Gold Nanoparticles on Floating Lipid Bilayers

(2013) Sabina Tatur et al.   LANGMUIR

Effect of Particle Diameter and Surface Composition on the Spontaneous Fusion of Monolayer-Protected Gold Nanoparticles with Lipid Bilayers

(2013) Reid C. Van Lehn et al.   NANO LETTERS

Free energy change for insertion of charged, monolayer-protected nanoparticles into lipid bilayers

(2013) Reid C. Van Lehn et al.   Soft Matter

Membrane Sculpting by F-BAR Domains Studied by Molecular Dynamics Simulations

(2013) Hang Yu et al.   PLoS Computational Biology

Electrical Method to Quantify Nanoparticle Interaction with Lipid Bilayers

(2012) Randy P. Carney et al.   ACS Nano

Lipid Bilayers: The Effect of Force Field on Ordering and Dynamics

(2012) David Poger et al.   Journal of Chemical Theory and Computation

Curvature Changes of Bilayer Membranes Studied by Computer Simulations

(2012) Kai Yang et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Effects of Nanoparticle Charge and Shape Anisotropy on Translocation through Cell Membranes

(2012) Shikha Nangia et al.   LANGMUIR

Surface-structure-regulated penetration of nanoparticles across a cell membrane

(2012) Yinfeng Li et al.   Nanoscale

Oligonucleotide Delivery by Cell-Penetrating “Striped” Nanoparticles

(2011) Christopher M. Jewell et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mechanism of Membrane Curvature Sensing by Amphipathic Helix Containing Proteins

(2011) Haosheng Cui et al.   BIOPHYSICAL JOURNAL

Definition and testing of the GROMOS force-field versions 54A7 and 54B7

(2011) Nathan Schmid et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Nano Meets Biology: Structure and Function at the Nanoparticle Interface

(2011) Daniel F. Moyano et al.   LANGMUIR

Receptor-Mediated Endocytosis of Nanoparticles of Various Shapes

(2011) Robert Vácha et al.   NANO LETTERS

Penetration of lipid bilayers by nanoparticles with environmentally-responsive surfaces: simulations and theory

(2011) Reid C. Van Lehn et al.   Soft Matter

Splaying of Aliphatic Tails Plays a Central Role in Barrier Crossing During Liposome Fusion

(2010) Dina Mirjanian et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Solvent-Exposed Tails as Prestalk Transition States for Membrane Fusion at Low Hydration

(2010) Yuliya G. Smirnova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Polarizable Water Model for the Coarse-Grained MARTINI Force Field

(2010) Semen O. Yesylevskyy et al.   PLoS Computational Biology

Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails

(2010) Peter M. Kasson et al.   PLoS Computational Biology

Membrane Curvature Induced by Aggregates of LH2s and Monomeric LH1s

(2009) Danielle E. Chandler et al.   BIOPHYSICAL JOURNAL

Membrane-Bending Mechanism of Amphiphysin N-BAR Domains

(2009) Anton Arkhipov et al.   BIOPHYSICAL JOURNAL

A new force field for simulating phosphatidylcholine bilayers

(2009) David Poger et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Structure and Bonding in the Ubiquitous Icosahedral Metallic Gold Cluster Au144(SR)60

(2009) Olga Lopez-Acevedo et al.   Journal of Physical Chemistry C

Understanding biophysicochemical interactions at the nano–bio interface

(2009) Andre E. Nel et al.   NATURE MATERIALS

Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molecular dynamics simulations

(2009) H. Jelger Risselada et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids

(2009) Nicolas Sapay et al.   Soft Matter

Gold nanoparticles in delivery applications☆

(2008) P GHOSH et al.   ADVANCED DRUG DELIVERY REVIEWS

Intrinsic Curvature Properties of Photosynthetic Proteins in Chromatophores

(2008) Danielle E. Chandler et al.   BIOPHYSICAL JOURNAL

Four-Scale Description of Membrane Sculpting by BAR Domains

(2008) Anton Arkhipov et al.   BIOPHYSICAL JOURNAL

The Hydrophobic Insertion Mechanism of Membrane Curvature Generation by Proteins

(2008) Felix Campelo et al.   BIOPHYSICAL JOURNAL

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Surface-structure-regulated cell-membrane penetration by monolayer-protected nanoparticles

(2008) Ayush Verma et al.   NATURE MATERIALS

Computer simulation study of fullerene translocation through lipid membranes

(2008) Jirasak Wong-Ekkabut et al.   Nature Nanotechnology

Nanoparticle-mediated cellular response is size-dependent

(2008) Wen Jiang et al.   Nature Nanotechnology

Mechanics of membrane fusion

(2008) Leonid V Chernomordik et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation