Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability

On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter

(2010) Antoine Coulon et al.   BMC Systems Biology

Pausing of RNA Polymerase II Disrupts DNA-Specified Nucleosome Organization to Enable Precise Gene Regulation

(2010) Daniel A. Gilchrist et al.   CELL

Promoter-proximal pausing and its release: Molecular mechanisms and physiological functions

(2010) Kunitoshi Chiba et al.   EXPERIMENTAL CELL RESEARCH

Effects of Transcriptional Pausing on Gene Expression Dynamics

(2010) Tiina Rajala et al.   PLoS Computational Biology

Single-Molecule Approaches to Stochastic Gene Expression

(2009) Arjun Raj et al.   Annual Review of Biophysics

RETRACTED: Population-Level Transcription Cycles Derive from Stochastic Timing of Single-Cell Transcription

(2009) Tatjana Degenhardt et al.   CELL

Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation

(2009) Diana C. Hargreaves et al.   CELL

Delayed Stochastic Model of Transcription at the Single Nucleotide Level

(2009) Andre S. Ribeiro et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Stochastic and delayed stochastic models of gene expression and regulation

(2009) Andre S. Ribeiro   MATHEMATICAL BIOSCIENCES

Transcription Dynamics

(2009) Gordon L. Hager et al.   MOLECULAR CELL

Defining mechanisms that regulate RNA polymerase II transcription in vivo

(2009) Nicholas J. Fuda et al.   NATURE

Synchronous and Stochastic Patterns of Gene Activation in theDrosophilaEmbryo

(2009) Alistair N. Boettiger et al.   SCIENCE

Poised RNA Polymerase II Gives Pause for Thought

(2008) Thanasis Margaritis et al.   CELL

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Promoter proximal pausing on genes in metazoans

(2008) David S. Gilmour   CHROMOSOMA

The RNA polymerase II core promoter — the gateway to transcription

(2008) Tamar Juven-Gershon et al.   CURRENT OPINION IN CELL BIOLOGY

Super-resolution microscopy by nanoscale localization of photo-switchable fluorescent probes

(2008) Mark Bates et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Cooperativity, Sensitivity, and Noise in Biochemical Signaling

(2008) William Bialek et al.   PHYSICAL REVIEW LETTERS

The Role of Input Noise in Transcriptional Regulation

(2008) Gašper Tkačik et al.   PLoS One

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

(2008) D. A. Hendrix et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of TATA-binding protein dynamics in living yeast cells

(2008) R. O. Sprouse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression

(2008) J. M. Pedraza et al.   SCIENCE

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

(2008) Leighton J. Core et al.   SCIENCE