Visualization and Analysis of 3D Microscopic Images

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Simultaneous recognition and segmentation of cells: application in C.elegans

(2011) L. Qu et al.   BIOINFORMATICS

Wavelet-based image fusion in multi-view three-dimensional microscopy

(2011) Jose L. Rubio-Guivernau et al.   BIOINFORMATICS

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Computer Vision in Cell Biology

(2011) Gaudenz Danuser   CELL

Complete Kinetochore Tracking Reveals Error-Prone Homologous Chromosome Biorientation in Mammalian Oocytes

(2011) Tomoya S. Kitajima et al.   CELL

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

(2010) H. Peng et al.   BIOINFORMATICS

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions

(2010) Hanchuan Peng et al.   NEUROINFORMATICS

VANO: a volume-object image annotation system

(2009) Hanchuan Peng et al.   BIOINFORMATICS

Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans

(2009) Xiao Liu et al.   CELL

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data

(2009) O. Rubel et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening

(2009) Vebjorn Ljosa et al.   PLoS Computational Biology

Microtubule Dynamics in Cell Division: Exploring Living Cells with Polarized Light Microscopy

(2008) Shinya Inoué   Annual Review of Cell and Developmental Biology

Bioimage informatics: a new area of engineering biology

(2008) Hanchuan Peng   BIOINFORMATICS

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE