HiTRACE: high-throughput robust analysis for capillary electrophoresis

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA

(2011) W. Kladwang et al.   RNA

A Mutate-and-Map Strategy for Inferring Base Pairs in Structured Nucleic Acids: Proof of Concept on a DNA/RNA Helix

(2010) Wipapat Kladwang et al.   BIOCHEMISTRY

Advances in RNA structure analysis by chemical probing

(2010) Kevin M Weeks   CURRENT OPINION IN STRUCTURAL BIOLOGY

Atomic accuracy in predicting and designing noncanonical RNA structure

(2010) Rhiju Das et al.   NATURE METHODS

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis

(2008) Yuanxin Xi et al.   BMC BIOINFORMATICS

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

(2008) Alain Laederach et al.   Nature Protocols

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

(2008) Somdeb Mitra et al.   NUCLEIC ACIDS RESEARCH

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

(2008) S. M. Vasa et al.   RNA

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY