Niche adaptation by expansion and reprogramming of general transcription factors

grofit: Fitting Biological Growth Curves withR

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Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

(2011) Bin Z. He et al.   PLoS Genetics

Integration and visualization of systems biology data in context of the genome

(2010) J Christopher Bare et al.   BMC BIOINFORMATICS

Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases

(2010) Rute R da Fonseca et al.   BMC EVOLUTIONARY BIOLOGY

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

(2010) Marc T Facciotti et al.   BMC Systems Biology

Lineage-specific transcription factors and the evolution of gene regulatory networks

(2010) K. Nowick et al.   Briefings in Functional Genomics

Noncoding Sequences Near Duplicated Genes Evolve Rapidly

(2010) Dennis Kostka et al.   Genome Biology and Evolution

Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria

(2010) Sarah M. Chiang et al.   JOURNAL OF MOLECULAR EVOLUTION

Coordination of frontline defense mechanisms under severe oxidative stress

(2010) Amardeep Kaur et al.   Molecular Systems Biology

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

Tomio Tada 1934–2010

(2010) Masaru Taniguchi   NATURE IMMUNOLOGY

Rewiring of Genetic Networks in Response to DNA Damage

(2010) S. Bandyopadhyay et al.   SCIENCE

The Lrp Family of Transcription Regulators in Archaea

(2010) Eveline Peeters et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Specific variants of general transcription factors regulate germ cell development in diverse organisms

(2009) Richard N. Freiman   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

(2009) Sarath Chandra Janga et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Early evolution of metazoan transcription factors

(2009) Bernard M Degnan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Regulation of gene expression via the core promoter and the basal transcriptional machinery

(2009) Tamar Juven-Gershon et al.   DEVELOPMENTAL BIOLOGY

Shifting Players and Paradigms in Cell-Specific Transcription

(2009) Joseph A. D'Alessio et al.   MOLECULAR CELL

The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription

(2009) Sonia Paytubi et al.   MOLECULAR MICROBIOLOGY

Prevalence of transcription promoters within archaeal operons and coding sequences

(2009) Tie Koide et al.   Molecular Systems Biology

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

Maximal Extraction of Biological Information from Genetic Interaction Data

(2009) Gregory W. Carter et al.   PLoS Computational Biology

Adaptive Evolution in Zinc Finger Transcription Factors

(2009) Ryan O. Emerson et al.   PLoS Genetics

Genome duplication and gene-family evolution: The case of three OXPHOS gene families

(2008) Anna De Grassi et al.   GENE

Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years

(2007) M. J. Lercher et al.   MOLECULAR BIOLOGY AND EVOLUTION