Integrative genomic and transcriptomic characterization of papillary carcinomas of the breast

Characterization of the genomic features and expressed fusion genes in micropapillary carcinomas of the breast

(2014) Rachael Natrajan et al.   JOURNAL OF PATHOLOGY

Genomic profiling of histological special types of breast cancer

(2013) Hugo M. Horlings et al.   BREAST CANCER RESEARCH AND TREATMENT

The molecular diversity of Luminal A breast tumors

(2013) Giovanni Ciriello et al.   BREAST CANCER RESEARCH AND TREATMENT

Genomic Instability: A Stronger Prognostic Marker Than Proliferation for Early Stage Luminal Breast Carcinomas

(2013) Anne Vincent-Salomon et al.   PLoS One

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

(2013) J. Gao et al.   Science Signaling

Predicting the Functional, Molecular, and Phenotypic Consequences of Amino Acid Substitutions using Hidden Markov Models

(2012) Hashem A. Shihab et al.   HUMAN MUTATION

Encapsulated papillary carcinoma of the breast: a study of invasion associated markers

(2012) Emad A Rakha et al.   JOURNAL OF CLINICAL PATHOLOGY

Genomic and mutational profiling of ductal carcinomas in situ and matched adjacent invasive breast cancers reveals intra-tumour genetic heterogeneity and clonal selection

(2012) Lucia Hernandez et al.   JOURNAL OF PATHOLOGY

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

(2012) Christina Curtis et al.   NATURE

Absolute quantification of somatic DNA alterations in human cancer

(2012) Scott L Carter et al.   NATURE BIOTECHNOLOGY

p53 mutations in cancer

(2012) Patricia A. J. Muller et al.   NATURE CELL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Respective Prognostic Value of Genomic Grade and Histological Proliferation Markers in Early Stage (pN0) Breast Carcinoma

(2012) Fabien Reyal et al.   PLoS One

Encapsulated Papillary Carcinoma of the Breast

(2011) Emad A. Rakha et al.   AMERICAN JOURNAL OF SURGICAL PATHOLOGY

ChimeraScan: a tool for identifying chimeric transcription in sequencing data

(2011) Matthew K. Iyer et al.   BIOINFORMATICS

Immunophenotypic and genomic characterization of papillary carcinomas of the breast

(2011) Raphaëlle Duprez et al.   JOURNAL OF PATHOLOGY

Adenoid cystic carcinomas constitute a genomically distinct subgroup of triple-negative and basal-like breast cancers

(2011) Daniel Wetterskog et al.   JOURNAL OF PATHOLOGY

Gene expression profiling in breast cancer: classification, prognostication, and prediction

(2011) Jorge S Reis-Filho et al.   LANCET

Predicting the functional impact of protein mutations: application to cancer genomics

(2011) Boris Reva et al.   NUCLEIC ACIDS RESEARCH

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

(2011) Andrew McPherson et al.   PLoS Computational Biology

Intracystic Papillary Carcinoma of the Breast

(2010) Christine A. Wynveen et al.   AMERICAN JOURNAL OF SURGICAL PATHOLOGY

Papillary carcinoma of the breast: an overview

(2010) Sumanta Kumar Pal et al.   BREAST CANCER RESEARCH AND TREATMENT

Lobular invasive carcinoma of the breast is a molecular entity distinct from luminal invasive ductal carcinoma

(2010) Nadège Gruel et al.   EUROPEAN JOURNAL OF CANCER

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Breast cancer precursors revisited: molecular features and progression pathways

(2010) Maria A Lopez-Garcia et al.   HISTOPATHOLOGY

Mucinous carcinoma of the breast is genomically distinct from invasive ductal carcinomas of no special type

(2010) Magali Lacroix-Triki et al.   JOURNAL OF PATHOLOGY

Breast cancer molecular profiling with single sample predictors: a retrospective analysis

(2010) Britta Weigelt et al.   LANCET ONCOLOGY

Histological types of breast cancer: How special are they?

(2010) Britta Weigelt et al.   Molecular Oncology

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

MutationTaster evaluates disease-causing potential of sequence alterations

(2010) Jana Marie Schwarz et al.   NATURE METHODS

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6

(2009) Henrik Bengtsson et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines

(2009) Alan Mackay et al.   BREAST CANCER RESEARCH AND TREATMENT

Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations

(2009) H. Carter et al.   CANCER RESEARCH

Tiling Path Genomic Profiling of Grade 3 Invasive Ductal Breast Cancers

(2009) R. Natrajan et al.   CLINICAL CANCER RESEARCH

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY

Mixed micropapillary–ductal carcinomas of the breast: a genomic and immunohistochemical analysis of morphologically distinct components

(2009) Caterina Marchiò et al.   JOURNAL OF PATHOLOGY

Molecular analysis reveals a genetic basis for the phenotypic diversity of metaplastic breast carcinomas

(2009) Felipe C Geyer et al.   JOURNAL OF PATHOLOGY

The molecular underpinning of lobular histological growth pattern: a genome-wide transcriptomic analysis of invasive lobular carcinomas and grade- and molecular subtype-matched invasive ductal carcinomas of no special type

(2009) Britta Weigelt et al.   JOURNAL OF PATHOLOGY

Mucinous and neuroendocrine breast carcinomas are transcriptionally distinct from invasive ductal carcinomas of no special type

(2009) Britta Weigelt et al.   MODERN PATHOLOGY

Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes

(2009) X. Hu et al.   MOLECULAR CANCER RESEARCH

Histological and molecular types of breast cancer: is there a unifying taxonomy?

(2009) Britta Weigelt et al.   Nature Reviews Clinical Oncology

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

(2009) Sohrab P. Shah et al.   NEW ENGLAND JOURNAL OF MEDICINE

Recurrent fusion of MYB and NFIB transcription factor genes in carcinomas of the breast and head and neck

(2009) M. Persson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human mitochondrial translation release factor HMRF1L is methylated in the GGQ motif by the methyltransferase HMPrmC

(2008) Toshihiro Ishizawa et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

Metaplastic breast carcinomas are basal-like breast cancers: a genomic profiling analysis

(2008) Britta Weigelt et al.   BREAST CANCER RESEARCH AND TREATMENT

Intracystic papillary carcinoma

(2008) Julia Grabowski et al.   CANCER

How Large a Training Set is Needed to Develop a Classifier for Microarray Data?

(2008) K. K. Dobbin et al.   CLINICAL CANCER RESEARCH

Refinement of breast cancer classification by molecular characterization of histological special types

(2008) B Weigelt et al.   JOURNAL OF PATHOLOGY

Genomic and immunophenotypical characterization of pure micropapillary carcinomas of the breast

(2008) C Marchiò et al.   JOURNAL OF PATHOLOGY

Genomic analysis of the HER2/TOP2A amplicon in breast cancer and breast cancer cell lines

(2008) Edurne Arriola et al.   LABORATORY INVESTIGATION

Lobular and ductal carcinomas of the breast have distinct genomic and expression profiles

(2008) F Bertucci et al.   ONCOGENE