Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management

Ebola Cases and Health System Demand in Liberia

(2015) John M. Drake et al.   PLOS BIOLOGY

Characterizing the Transmission Dynamics and Control of Ebola Virus Disease

(2015) Gerardo Chowell et al.   PLOS BIOLOGY

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions

(2014) Stéphane Hué et al.   AIDS

Infectious disease: Tough choices to reduce Ebola transmission

(2014) Christopher J. M. Whitty et al.   NATURE

Emergence of Zaire Ebola Virus Disease in Guinea

(2014) Sylvain Baize et al.   NEW ENGLAND JOURNAL OF MEDICINE

Ebola Virus Disease in West Africa — The First 9 Months of the Epidemic and Forward Projections

(2014)   NEW ENGLAND JOURNAL OF MEDICINE

Zero infection

(2014) M. Woolhouse et al.   SCIENCE

Strategies for containing Ebola in West Africa

(2014) A. Pandey et al.   SCIENCE

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Standards for Sequencing Viral Genomes in the Era of High-Throughput Sequencing

(2014) J. T. Ladner et al.   mBio

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

Epidemiological dynamics of Ebola outbreaks

(2014) Thomas House   eLife

Mapping the zoonotic niche of Ebola virus disease in Africa

(2014) David M Pigott et al.   eLife

FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations

(2013) John J Grefenstette et al.   BMC PUBLIC HEALTH

Simulation-based Bayesian inference for epidemic models

(2013) Trevelyan J. McKinley et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt, June 2013

(2013) R Perera et al.   Eurosurveillance

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

(2013) N. R. Faria et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inference of R0 and Transmission Heterogeneity from the Size Distribution of Stuttering Chains

(2013) Seth Blumberg et al.   PLoS Computational Biology

Reassessing Google Flu Trends Data for Detection of Seasonal and Pandemic Influenza: A Comparative Epidemiological Study at Three Geographic Scales

(2013) Donald R. Olson et al.   PLoS Computational Biology

Influenza serological studies to inform public health action: best practices to optimise timing, quality and reporting

(2012) Karen L. Laurie et al.   Influenza and Other Respiratory Viruses

Origin and fate of A/H1N1 influenza in Scotland during 2009

(2012) S. Lycett et al.   JOURNAL OF GENERAL VIROLOGY

Prediction and prevention of the next pandemic zoonosis

(2012) Stephen S Morse et al.   LANCET

Seroevidence for H5N1 Influenza Infections in Humans: Meta-Analysis

(2012) T. T. Wang et al.   SCIENCE

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

Sero-Prevalence and Incidence of A/H1N1 2009 Influenza Infection in Scotland in Winter 2009–2010

(2011) Nigel J. McLeish et al.   PLoS One

The Age-Specific Cumulative Incidence of Infection with Pandemic Influenza H1N1 2009 Was Similar in Various Countries Prior to Vaccination

(2011) Heath Kelly et al.   PLoS One

Relationship Between Clinical Signs and Transmission of an Infectious Disease and the Implications for Control

(2011) B. Charleston et al.   SCIENCE

Explaining Observed Infection and Antibody Age-Profiles in Populations with Urogenital Schistosomiasis

(2011) Kate M. Mitchell et al.   PLoS Computational Biology

Routine use of point-of-care tests: usefulness and application in clinical microbiology

(2010) O. Clerc et al.   CLINICAL MICROBIOLOGY AND INFECTION

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Studies Needed to Address Public Health Challenges of the 2009 H1N1 Influenza Pandemic: Insights from Modeling

(2010) Maria D. Van Kerkhove et al.   PLOS MEDICINE

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Discovering the Phylodynamics of RNA Viruses

(2009) Edward C. Holmes et al.   PLoS Computational Biology