iPro70-FMWin: identifying Sigma70 promoters using multiple windowing and minimal features

iEnhancer-EL: Identifying enhancers and their strength with ensemble learning approach

(2018) Bin Liu et al.   BIOINFORMATICS

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC

(2018) Zhen-Dong Su et al.   BIOINFORMATICS

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC

(2018) Hui Yang et al.   International Journal of Biological Sciences

Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC

(2018) Shengli Zhang et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC

(2018) Ernesto Contreras-Torres   JOURNAL OF THEORETICAL BIOLOGY

Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC

(2018) M. Fazli Sabooh et al.   JOURNAL OF THEORETICAL BIOLOGY

DPP-PseAAC: A DNA-binding protein prediction model using Chou’s general PseAAC

(2018) M. Saifur Rahman et al.   JOURNAL OF THEORETICAL BIOLOGY

Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains

(2018) S. Muthu Krishnan   JOURNAL OF THEORETICAL BIOLOGY

Analysis and prediction of presynaptic and postsynaptic neurotoxins by Chou's general pseudo amino acid composition and motif features

(2018) Juan Mei et al.   JOURNAL OF THEORETICAL BIOLOGY

iMem-2LSAAC: A two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into chou's pseudo amino acid composition

(2018) Muhammad Arif et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of HIV-1 and HIV-2 proteins by using Chou’s pseudo amino acid compositions and different classifiers

(2018) Juan Mei et al.   Scientific Reports

iRNA-3typeA: Identifying Three Types of Modification at RNA’s Adenosine Sites

(2018) Wei Chen et al.   Molecular Therapy-Nucleic Acids

iPromoter-FSEn: Identification of bacterial σ 70 promoter sequences using feature subspace based ensemble classifier

(2018) Md. Siddiqur Rahman et al.   GENOMICS

iDTI-ESBoost: Identification of Drug Target Interaction Using Evolutionary and Structural Features with Boosting

(2017) Farshid Rayhan et al.   Scientific Reports

Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique

(2016) Hua Tang et al.   Molecular BioSystems

Identification of Secretory Proteins inMycobacterium tuberculosisUsing Pseudo Amino Acid Composition

(2016) Huan Yang et al.   Biomed Research International

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

(2015) Wei Chen et al.   Molecular BioSystems

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Application of high-dimensional feature selection: evaluation for genomic prediction in man

(2015) M. L. Bermingham et al.   Scientific Reports

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

A framework for the interpretation of de novo mutation in human disease

(2014) Kaitlin E Samocha et al.   NATURE GENETICS

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

DNA duplex stability as discriminative characteristic for Escherichia coli σ54- and σ28- dependent promoter sequences

(2013) Scheila de Avila e Silva et al.   BIOLOGICALS

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

(2013) P. A. Ginno et al.   GENOME RESEARCH

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

A comparison study on feature selection of DNA structural properties for promoter prediction

(2012) Yanglan Gan et al.   BMC BIOINFORMATICS

How to apply de Bruijn graphs to genome assembly

(2011) Phillip E C Compeau et al.   NATURE BIOTECHNOLOGY

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

(2011) Kai Song   NUCLEIC ACIDS RESEARCH

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Eukaryotic and prokaryotic promoter prediction using hybrid approach

(2010) Hao Lin et al.   THEORY IN BIOSCIENCES

Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70

(2010) Jonghyeon Shin et al.   Journal of Biological Engineering

An iterative strategy combining biophysical criteria and duration hidden Markov models for structural predictions of Chlamydia trachomatis σ66 promoters

(2009) Ronna R Mallios et al.   BMC BIOINFORMATICS

Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

(2009) Kuo-Chen Chou   Current Proteomics

High-Resolution Mapping and Characterization of Open Chromatin across the Genome

(2008) Alan P. Boyle et al.   CELL

The cross-species prediction of bacterial promoters using a support vector machine

(2008) Michael Towsey et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Churn prediction in subscription services: An application of support vector machines while comparing two parameter-selection techniques

(2006) Kristof Coussement et al.   EXPERT SYSTEMS WITH APPLICATIONS