RNase E in the γ-Proteobacteria: conservation of intrinsically disordered noncatalytic region and molecular evolution of microdomains

Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions

(2014) Christopher J. Oldfield et al.   Annual Review of Biochemistry

Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation

(2014) Kim Van Roey et al.   CHEMICAL REVIEWS

A Million Peptide Motifs for the Molecular Biologist

(2014) Peter Tompa et al.   MOLECULAR CELL

RNase E forms a complex with polynucleotide phosphorylase in cyanobacteria via a cyanobacterial-specific nonapeptide in the noncatalytic region

(2014) J.-Y. Zhang et al.   RNA

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

Novel insights through the integration of structural and functional genomics data with protein networks

(2012) Declan Clarke et al.   JOURNAL OF STRUCTURAL BIOLOGY

Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli

(2012) Yi-Chun Tsai et al.   NUCLEIC ACIDS RESEARCH

Intrinsically disordered proteins: a 10-year recap

(2012) Peter Tompa   TRENDS IN BIOCHEMICAL SCIENCES

The cutting crew - ribonucleases are key players in the control of plastid gene expression

(2011) R. Stoppel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins

(2011) Varinia López-Ramírez et al.   JOURNAL OF MOLECULAR EVOLUTION

From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome

(2011) Maria W. Górna et al.   QUARTERLY REVIEWS OF BIOPHYSICS

LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase

(2011) D. Harbi et al.   Database-The Journal of Biological Databases and Curation

Molecular recognition betweenEscherichia colienolase and ribonuclease E

(2010) Salima Nurmohamed et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the Gammaproteobacteria

(2010) S. Ait-Bara et al.   JOURNAL OF BACTERIOLOGY

The Response Regulator SprE (RssB) Is Required for Maintaining Poly(A) Polymerase I-Degradosome Association during Stationary Phase

(2010) V. J. Carabetta et al.   JOURNAL OF BACTERIOLOGY

Phylogeny of Gammaproteobacteria

(2010) K. P. Williams et al.   JOURNAL OF BACTERIOLOGY

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli

(2010) Yoshiki Ikeda et al.   MOLECULAR MICROBIOLOGY

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

An RNA degradosome assembly in Caulobacter crescentus

(2010) S. W. Hardwick et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome

(2010) M. W. Gorna et al.   RNA

Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners

(2009) Melissa A. Erce et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria

(2009) B. Gao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Crystal Structure of Escherichia coli Polynucleotide Phosphorylase Core Bound to RNase E, RNA and Manganese: Implications for Catalytic Mechanism and RNA Degradosome Assembly

(2009) Salima Nurmohamed et al.   JOURNAL OF MOLECULAR BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli

(2009) Dharam Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins

(2009) Michelle Simon et al.   GENOME BIOLOGY

Reconstitution and Analysis of the Multienzyme Escherichia coli RNA Degradosome

(2008) Jonathan A.R. Worrall et al.   JOURNAL OF MOLECULAR BIOLOGY

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

(2008) A. Schein et al.   RNA