From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome
Authors
Keywords
-
Journal
QUARTERLY REVIEWS OF BIOPHYSICS
Volume 45, Issue 02, Pages 105-145
Publisher
Cambridge University Press (CUP)
Online
2011-12-14
DOI
10.1017/s003358351100014x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Characterization of Components of the Staphylococcus aureus mRNA Degradosome Holoenzyme-Like Complex
- (2011) C. M. Roux et al. JOURNAL OF BACTERIOLOGY
- RNase Y in Bacillus subtilis: a Natively Disordered Protein That Is the Functional Equivalent of RNase E from Escherichia coli
- (2011) M. Lehnik-Habrink et al. JOURNAL OF BACTERIOLOGY
- Polynucleotide Phosphorylase Activity May Be Modulated by Metabolites inEscherichia coli
- (2011) Salima Nurmohamed et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Cyclic di-GMP Activation of Polynucleotide Phosphorylase Signal-Dependent RNA Processing
- (2011) Jason R. Tuckerman et al. JOURNAL OF MOLECULAR BIOLOGY
- The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli
- (2011) Chase L. Beisel et al. MOLECULAR CELL
- Roles of the 5′-phosphate sensor domain in RNase E
- (2011) Stephen M. Garrey et al. MOLECULAR MICROBIOLOGY
- Hfq and its constellation of RNA
- (2011) Jörg Vogel et al. NATURE REVIEWS MICROBIOLOGY
- Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq
- (2011) Mads Beich-Frandsen et al. NUCLEIC ACIDS RESEARCH
- Structural basis for RNA 3′-end recognition by Hfq
- (2011) Evelyn Sauer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Processive Movement of MreB-Associated Cell Wall Biosynthetic Complexes in Bacteria
- (2011) J. Dominguez-Escobar et al. SCIENCE
- Translation-Independent Localization of mRNA in E. coli
- (2011) K. Nevo-Dinur et al. SCIENCE
- Molecular recognition betweenEscherichia colienolase and ribonuclease E
- (2010) Salima Nurmohamed et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- PNPASE Regulates RNA Import into Mitochondria
- (2010) Geng Wang et al. CELL
- The role of Hfq in bacterial pathogens
- (2010) Yanjie Chao et al. CURRENT OPINION IN MICROBIOLOGY
- Analysis of the RNA degradosome complex in Vibrio angustum S14
- (2010) Melissa A. Erce et al. FEBS Journal
- Virulence Gene Regulation by CvfA, a Putative RNase: the CvfA-Enolase Complex in Streptococcus pyogenes Links Nutritional Stress, Growth-Phase Control, and Virulence Gene Expression
- (2010) S. O. Kang et al. INFECTION AND IMMUNITY
- Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the Gammaproteobacteria
- (2010) S. Ait-Bara et al. JOURNAL OF BACTERIOLOGY
- Initiation of Decay of Bacillus subtilis rpsO mRNA by Endoribonuclease RNase Y
- (2010) S. Yao et al. JOURNAL OF BACTERIOLOGY
- Self-Assembly of the Bacterial Cytoskeleton-Associated RNA Helicase B Protein into Polymeric Filamentous Structures
- (2010) A. Taghbalout et al. JOURNAL OF BACTERIOLOGY
- (p)ppGpp Inhibits Polynucleotide Phosphorylase from Streptomyces but Not from Escherichia coli and Increases the Stability of Bulk mRNA in Streptomyces coelicolor
- (2010) M. L. Gatewood et al. JOURNAL OF BACTERIOLOGY
- The Response Regulator SprE (RssB) Is Required for Maintaining Poly(A) Polymerase I-Degradosome Association during Stationary Phase
- (2010) V. J. Carabetta et al. JOURNAL OF BACTERIOLOGY
- Euryarchaeal β-CASP Proteins with Homology to Bacterial RNase J Have 5′- to 3′-Exoribonuclease Activity
- (2010) Béatrice Clouet-d'Orval et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Guanosine 5′-diphosphate 3′-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a ‘rare’ actinomycete
- (2010) Luisa Siculella et al. MOLECULAR MICROBIOLOGY
- Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
- (2010) Yoshiki Ikeda et al. MOLECULAR MICROBIOLOGY
- Spatial organization of the flow of genetic information in bacteria
- (2010) Paula Montero Llopis et al. NATURE
- Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
- (2010) Chantal Bohn et al. NUCLEIC ACIDS RESEARCH
- Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
- (2010) Mark B. Stead et al. NUCLEIC ACIDS RESEARCH
- An RNA degradosome assembly in Caulobacter crescentus
- (2010) S. W. Hardwick et al. NUCLEIC ACIDS RESEARCH
- Unraveling new roles for minor components of the E. coli RNA degradosome
- (2010) Vladimir R. Kaberdin et al. RNA Biology
- The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome
- (2010) M. W. Gorna et al. RNA
- Degradation of ribosomal RNA during starvation: Comparison to quality control during steady-state growth and a role for RNase PH
- (2010) G. N. Basturea et al. RNA
- RNA helicases at work: binding and rearranging
- (2010) Eckhard Jankowsky TRENDS IN BIOCHEMICAL SCIENCES
- What is Cooperativity?
- (2009) Christopher A. Hunter et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The Structural and Functional Diversity of Metabolite-Binding Riboswitches
- (2009) Adam Roth et al. Annual Review of Biochemistry
- Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners
- (2009) Melissa A. Erce et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- The Native 3D Organization of Bacterial Polysomes
- (2009) Florian Brandt et al. CELL
- The Many Pathways of RNA Degradation
- (2009) Jonathan Houseley et al. CELL
- Regulatory RNAs in Bacteria
- (2009) Lauren S. Waters et al. CELL
- The Yeast Exosome Functions as a Macromolecular Cage to Channel RNA Substrates for Degradation
- (2009) Fabien Bonneau et al. CELL
- Linking folding and binding
- (2009) Peter E Wright et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Stability effects of mutations and protein evolvability
- (2009) Nobuhiko Tokuriki et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
- (2009) Karen Shahbabian et al. EMBO JOURNAL
- Human Mitochondrial SUV3 and Polynucleotide Phosphorylase Form a 330-kDa Heteropentamer to Cooperatively Degrade Double-stranded RNA with a 3′-to-5′ Directionality
- (2009) Dennis Ding-Hwa Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Substrate Binding and Active Site Residues in RNases E and G
- (2009) Stephen M. Garrey et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Origins and activities of the eukaryotic exosome
- (2009) S. Lykke-Andersen et al. JOURNAL OF CELL SCIENCE
- Crystal Structure of Escherichia coli Polynucleotide Phosphorylase Core Bound to RNase E, RNA and Manganese: Implications for Catalytic Mechanism and RNA Degradosome Assembly
- (2009) Salima Nurmohamed et al. JOURNAL OF MOLECULAR BIOLOGY
- Novel Activities of Glycolytic Enzymes inBacillus subtilis
- (2009) Fabian M. Commichau et al. MOLECULAR & CELLULAR PROTEOMICS
- A Convergence of rRNA and mRNA Quality Control Pathways Revealed by Mechanistic Analysis of Nonfunctional rRNA Decay
- (2009) Sarah E. Cole et al. MOLECULAR CELL
- RNase E autoregulates its synthesis inEscherichia coliby binding directly to a stem-loop in therne5′ untranslated region
- (2009) Alyssa Schuck et al. MOLECULAR MICROBIOLOGY
- Ribosomes initiating translation of thehbsmRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1
- (2009) Roula Daou-Chabo et al. MOLECULAR MICROBIOLOGY
- Rapid cleavage of RNA by RNase E in the absence of 5′ monophosphate stimulation
- (2009) Louise Kime et al. MOLECULAR MICROBIOLOGY
- Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
- (2009) Kai Papenfort et al. MOLECULAR MICROBIOLOGY
- Co-translational mRNA decay in Saccharomyces cerevisiae
- (2009) Wenqian Hu et al. NATURE
- Structure and function of the 5′→3′ exoribonuclease Rat1 and its activating partner Rai1
- (2009) Song Xiang et al. NATURE
- Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover
- (2009) Olivia S Rissland et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
- (2009) Verena Pfeiffer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit
- (2009) Lisa M. Sharpe Elles et al. NUCLEIC ACIDS RESEARCH
- SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo
- (2009) Dmitrii Trubetskoy et al. NUCLEIC ACIDS RESEARCH
- Human mitochondrial RNA turnover caught in flagranti: involvement of hSuv3p helicase in RNA surveillance
- (2009) Roman J. Szczesny et al. NUCLEIC ACIDS RESEARCH
- Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli
- (2009) Dharam Singh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
- (2009) T. M. Link et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins
- (2009) S. Pechmann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii
- (2009) J. Zhang et al. RNA
- Initiation of ribosome degradation during starvation in Escherichia coli
- (2009) M. A. Zundel et al. RNA
- Cell regulation: determined to signal discrete cooperation
- (2009) Toby J. Gibson TRENDS IN BIOCHEMICAL SCIENCES
- Translocation and Unwinding Mechanisms of RNA and DNA Helicases
- (2008) Anna Marie Pyle Annual Review of Biophysics
- Translational control by cytoplasmic polyadenylation in Xenopus oocytes
- (2008) Helois E. Radford et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Function and structure of inherently disordered proteins
- (2008) A Keith Dunker et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The multienzyme architecture of eukaryotic fatty acid synthases
- (2008) Marc Leibundgut et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA
- (2008) Lauri Peil et al. FEBS Journal
- A careful disorderliness in the proteome: Sites for interaction and targets for future therapies
- (2008) Robert B. Russell et al. FEBS LETTERS
- Understanding eukaryotic linear motifs and their role in cell signaling and regulation
- (2008) Francesca Diella Frontiers in Bioscience-Landmark
- Noncoding RNA control of the making and breaking of sugars
- (2008) B. Gorke et al. GENES & DEVELOPMENT
- Riboswitch RNAs: using RNA to sense cellular metabolism
- (2008) T. M. Henkin GENES & DEVELOPMENT
- RNase E Regulates the Yersinia Type 3 Secretion System
- (2008) J. Yang et al. JOURNAL OF BACTERIOLOGY
- RNaseE and RNA Helicase B Play Central Roles in the Cytoskeletal Organization of the RNA Degradosome
- (2008) Aziz Taghbalout et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Regulation ofEscherichia coliPolynucleotide Phosphorylase by ATP
- (2008) Marta Del Favero et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis*
- (2008) Elisabeth A. Mudd et al. JOURNAL OF EXPERIMENTAL BOTANY
- Reconstitution and Analysis of the Multienzyme Escherichia coli RNA Degradosome
- (2008) Jonathan A.R. Worrall et al. JOURNAL OF MOLECULAR BIOLOGY
- Small Toxic Proteins and the Antisense RNAs That Repress Them
- (2008) E. M. Fozo et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Transcript stability in the protein interaction network of Escherichia coli
- (2008) Sarath Chandra Janga et al. Molecular BioSystems
- Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
- (2008) Marie Bouvier et al. MOLECULAR CELL
- Lipid spirals in Bacillus subtilis and their role in cell division
- (2008) Imrich Barák et al. MOLECULAR MICROBIOLOGY
- A rough guide to the non-coding RNA world ofSalmonella
- (2008) Jörg Vogel MOLECULAR MICROBIOLOGY
- Endonucleolytic RNA cleavage by a eukaryotic exosome
- (2008) Alice Lebreton et al. NATURE
- The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal
- (2008) Atilio Deana et al. NATURE
- Cooperativity and biological complexity
- (2008) Adrian Whitty Nature Chemical Biology
- The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
- (2008) Daneen Schaeffer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Structural insights into the dual activity of RNase J
- (2008) Inés Li de la Sierra-Gallay et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Phylogeny.fr: robust phylogenetic analysis for the non-specialist
- (2008) A. Dereeper et al. NUCLEIC ACIDS RESEARCH
- Translation initiation factor a/eIF2(- ) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus
- (2008) D. Hasenohrl et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme
- (2008) A. Schein et al. RNA
- Crystal structure of Escherichia coli PNPase: Central channel residues are involved in processive RNA degradation
- (2008) Z. Shi et al. RNA
- PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
- (2008) J. M. Andrade et al. RNA
- The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation
- (2008) Daniel J. Koslover et al. STRUCTURE
- Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq
- (2008) Alexandra Sittka et al. PLoS Genetics
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now