PIECE: a database for plant gene structure comparison and evolution

GECA: a fast tool for gene evolution and conservation analysis in eukaryotic protein families

(2012) N. Fawal et al.   BIOINFORMATICS

Evolutionary view of acyl-CoA diacylglycerol acyltransferase (DGAT), a key enzyme in neutral lipid biosynthesis

(2011) Andreia C Turchetto-Zolet et al.   BMC EVOLUTIONARY BIOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Characterization of the HD-ZIP IV Transcription Factor Family in Maize: Preferential Expression in the Epidermis

(2011) M. Javelle et al.   PLANT PHYSIOLOGY

GLOOME: gain loss mapping engine

(2010) O. Cohen et al.   BIOINFORMATICS

GreenPhylDB v2.0: comparative and functional genomics in plants

(2010) Mathieu Rouard et al.   NUCLEIC ACIDS RESEARCH

The plant ADH gene family

(2010) Judith Strommer   PLANT JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci

(2009) D. Rambaldi et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Common introns within orthologous genes: software and application to plants

(2009) M. D. Wilkerson et al.   BRIEFINGS IN BIOINFORMATICS

PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants

(2009) S. Proost et al.   PLANT CELL

Extensive Structural Renovation of Retrogenes in the Evolution of the Populus Genome

(2009) Z. Zhu et al.   PLANT PHYSIOLOGY

Intron Evolution: Testing Hypotheses of Intron Evolution Using the Phylogenomics of Tetraspanins

(2009) Antonio Garcia-España et al.   PLoS One

Malin: maximum likelihood analysis of intron evolution in eukaryotes

(2008) M. Csuros   BIOINFORMATICS

ExDom: an integrated database for comparative analysis of the exon–intron structures of protein domains in eukaryotes

(2008) Ashwini Bhasi et al.   NUCLEIC ACIDS RESEARCH

Exalign: a new method for comparative analysis of exon–intron gene structures

(2008) Giulio Pavesi et al.   NUCLEIC ACIDS RESEARCH